RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 KLHL30Q0D2K2 578 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 SLC10A7Q0GE19 358 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 PPP6R3Q5H9R7 873 aaPredicted RBP13.56□□□□□ -0.24
CHD3-209ENST00000473376 CRTC1Q6UUV9 634 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 TMCO3Q6UWJ1 677 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 ZNF571Q7Z3V5 609 aaPredicted RBP13.56□□□□□ -0.24
CHD3-209ENST00000473376 SPRED1Q7Z699 444 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 NDUFAF2Q8N183 169 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 NETO2Q8NC67 525 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 NSMCE1Q8WV22 266 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 SCARF2Q96GP6 870 aaPredicted RBP13.56□□□□□ -0.24
CHD3-209ENST00000473376 MCCC1Q96RQ3 725 aaPredicted RBP13.56□□□□□ -0.24
CHD3-209ENST00000473376 DPYSL5Q9BPU6 564 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 GSDMCQ9BYG8 508 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 HAUS2Q9NVX0 235 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 SEPT10Q9P0V9 454 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 SIRPGQ9P1W8 387 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 LRIT1Q9P2V4 623 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 AMACRQ9UHK6 382 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 DNPEPQ9ULA0 475 aa13.56□□□□□ -0.24
CHD3-209ENST00000473376 COL6A6A6NMZ7 2263 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 A0A1B0GTH6 734 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 TMCO5BA8MYB1 307 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 B8ZZF3 427 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 DDX3XO00571 662 aaKnown RBP eCLIP13.55□□□□□ -0.24
CHD3-209ENST00000473376 HGSO14964 777 aaPredicted RBP13.55□□□□□ -0.24
CHD3-209ENST00000473376 CPNE6O95741 557 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 IVLP07476 585 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 JMJD7P0C870 316 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 LIPCP11150 499 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 SFTPCP11686 197 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 CCNB1P14635 433 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 VIPR1P32241 457 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 ILF3Q12906 894 aaKnown RBP eCLIP13.55□□□□□ -0.24
CHD3-209ENST00000473376 TRA2AQ13595 282 aaKnown RBP eCLIP13.55□□□□□ -0.24
CHD3-209ENST00000473376 ARHGEF7Q14155 803 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 ZNF235Q14590 738 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 ACOX1Q15067 660 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 MARC1Q5VT66 337 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 SPECC1LQ69YQ0 1117 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 B3GNT8Q7Z7M8 397 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 SLITRK4Q8IW52 837 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 TEX26Q8N6G2 289 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 AOPEPQ8N6M6 819 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 FAM71BQ8TC56 605 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 NUS1Q96E22 293 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 DTD2Q96FN9 168 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 CSPG4P5Q96PW8 444 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 FRMD8Q9BZ67 464 aaPredicted RBP13.55□□□□□ -0.24
CHD3-209ENST00000473376 TMEM168Q9H0V1 697 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 DPEP2Q9H4A9 486 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 EPB41L5Q9HCM4 733 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 AKAP7Q9P0M2 348 aaPredicted RBP13.55□□□□□ -0.24
CHD3-209ENST00000473376 B4GALT6Q9UBX8 382 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 SLC17A4Q9Y2C5 497 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 ATMQ13315 3056 aa13.55□□□□□ -0.24
CHD3-209ENST00000473376 ZNF462Q96JM2 2506 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 CEACAM5P06731 702 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 ZNF30P17039 623 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 B4GALNT1Q00973 533 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 NR1I3Q14994 352 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 CNGA3Q16281 694 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 TMEM164Q5U3C3 297 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 ALG1LQ6GMV1 187 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 ARHGAP36Q6ZRI8 547 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 USP45Q70EL2 814 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 ZNF765Q7L2R6 523 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 PIM3Q86V86 326 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 PAF1Q8N7H5 531 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 ZNF653Q96CK0 615 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 LGR4Q9BXB1 951 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 CYP4F12Q9HCS2 524 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 IP6K2Q9UHH9 426 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 LCMT1Q9UIC8 334 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 LOXL2Q9Y4K0 774 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 RNF215Q9Y6U7 377 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 LRP4O75096 1905 aa13.54□□□□□ -0.24
CHD3-209ENST00000473376 A0A1W2PQJ5 194 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 J3QKU1 62 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 ATMINO43313 823 aaPredicted RBP13.53□□□□□ -0.24
CHD3-209ENST00000473376 FZD6O60353 706 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 PGLSO95336 258 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 CPP00450 1065 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 IL1R2P27930 398 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 MMP13P45452 471 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 CDK3Q00526 305 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 LRP8Q14114 963 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 ARMC12Q5T9G4 340 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 FOXR1Q6PIV2 292 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 TECPR1Q7Z6L1 1165 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 DTX1Q86Y01 620 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 ATPAF2Q8N5M1 289 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 SGF29Q96ES7 293 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 NSMCE3Q96MG7 304 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 SEMA3CQ99985 751 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 FOXP3Q9BZS1 431 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 TRIM7Q9C029 511 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 NOD2Q9HC29 1040 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 PCDHGC4Q9Y5F7 938 aa13.53□□□□□ -0.24
CHD3-209ENST00000473376 PCDHGA3Q9Y5H0 932 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms