RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 TNFAIP1Q13829 316 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 IDI1Q13907 227 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 DPYSQ14117 519 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 RAB30Q15771 203 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 PFKFB3Q16875 520 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 HFEQ30201 348 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 LRIT3Q3SXY7 679 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 XKR3Q5GH77 459 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 ATG16L1Q676U5 607 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 ADALQ6DHV7 355 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 PAPD4Q6PIY7 484 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 CYP20A1Q6UW02 462 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 RFX6Q8HWS3 928 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 CNTN4Q8IWV2 1026 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 NRACQ8N912 160 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 ERMNQ8TAM6 284 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 CCDC110Q8TBZ0 833 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 TMEM171Q8WVE6 324 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 CDKL2Q92772 493 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 SDCCAG3Q96C92 435 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 RMDN1Q96DB5 314 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 DTNBP1Q96EV8 351 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 EDC3Q96F86 508 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 NLRP4Q96MN2 994 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 PRICKLE1Q96MT3 831 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 MTMR9Q96QG7 549 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 SNX18Q96RF0 628 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 MMS19Q96T76 1030 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 P2RX7Q99572 595 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 FAM118BQ9BPY3 351 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 ERP44Q9BS26 406 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 EFHD1Q9BUP0 239 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 TWSG1Q9GZX9 223 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 ABCG8Q9H221 673 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 ABHD16BQ9H3Z7 469 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 GORASP2Q9H8Y8 452 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 SEPSECSQ9HD40 501 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 IL1RAPL2Q9NP60 686 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 A1CFQ9NQ94 594 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 SLC35C2Q9NQQ7 365 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 CNNM1Q9NRU3 951 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 PI4KBQ9UBF8 816 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 BAG5Q9UL15 447 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 C15orf41Q9Y2V0 281 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 PCDHGA5Q9Y5G8 931 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 EVC2Q86UK5 1308 aa4.94□□□□□ -1.62
CCDC88A-210ENST00000468534 TRAV6A0A075B6T7 132 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 TRAV34A0A0B4J273 112 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 RSPH10B2B2RC85 870 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 DNM1LO00429 736 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 PIP5K1BO14986 540 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 ANGPT2O15123 496 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 TO15178 435 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 CASC3O15234 703 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 CD3EAPO15446 510 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 BUB1O43683 1085 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 ZC3H11AO75152 810 aaKnown RBP eCLIP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 ENTPD3O75355 529 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 FLOT1O75955 427 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 F9P00740 461 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 INHBAP08476 426 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 ITGA2BP08514 1039 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 CHRM5P08912 532 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 CNPP09543 421 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 RSPH10BP0C881 870 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 UBTFL6P0CB48 400 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 SNHG28P0DPA3 235 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 GHRP10912 638 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 BRAFP15056 766 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 RXRAP19793 462 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 PTAFRP25105 342 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 GCH1P30793 250 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 SLC11A2P49281 568 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 CCNHP51946 323 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 BLVRAP53004 296 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 PRKAG1P54619 331 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 FOXG1P55316 489 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 TUBA1BP68363 451 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 PPATQ06203 517 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 ELP6Q0PNE2 266 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 LMAN2Q12907 356 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 TRA2AQ13595 282 aaKnown RBP eCLIP4.93□□□□□ -1.622e-6■■■■■ 27.7
CCDC88A-210ENST00000468534 CAPSQ13938 189 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 SQLEQ14534 574 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 CYP1B1Q16678 543 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 MEP1BQ16820 701 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 ZIK1Q3SY52 487 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 RNASE12Q5GAN4 147 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 PLEKHS1Q5SXH7 462 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 C1orf185Q5T7R7 199 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 KLHL17Q6TDP4 642 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 SUSD1Q6UWL2 747 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 C6orf89Q6UWU4 347 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 ATF7IPQ6VMQ6 1270 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 ZNF517Q6ZMY9 492 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 FAM83HQ6ZRV2 1179 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 LINC00696Q6ZRV3 163 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 TUBA1AQ71U36 451 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 PLPPR4Q7Z2D5 763 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms