RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 C14orf28Q4W4Y0 310 aa21.1■□□□□ 0.97
COL9A3-207ENST00000467819 SPECC1LQ69YQ0 1117 aa21.1■□□□□ 0.97
COL9A3-207ENST00000467819 OGFOD3Q6PK18 319 aa21.1■□□□□ 0.97
COL9A3-207ENST00000467819 TRIM11Q96F44 468 aa21.1■□□□□ 0.97
COL9A3-207ENST00000467819 COQ10AQ96MF6 247 aa21.1■□□□□ 0.97
COL9A3-207ENST00000467819 TMEM63CQ9P1W3 806 aa21.1■□□□□ 0.97
COL9A3-207ENST00000467819 LRIT1Q9P2V4 623 aa21.1■□□□□ 0.97
COL9A3-207ENST00000467819 APPL1Q9UKG1 709 aa21.1■□□□□ 0.97
COL9A3-207ENST00000467819 FLNBO75369 2602 aaKnown RBP21.09■□□□□ 0.97
COL9A3-207ENST00000467819 SMTNL1A8MU46 457 aa21.09■□□□□ 0.97
COL9A3-207ENST00000467819 VIPR1P32241 457 aa21.09■□□□□ 0.97
COL9A3-207ENST00000467819 PCK1P35558 622 aa21.09■□□□□ 0.97
COL9A3-207ENST00000467819 ARHGEF7Q14155 803 aa21.09■□□□□ 0.97
COL9A3-207ENST00000467819 DPYSL2Q16555 572 aa21.09■□□□□ 0.97
COL9A3-207ENST00000467819 TMCO3Q6UWJ1 677 aa21.09■□□□□ 0.97
COL9A3-207ENST00000467819 SPRED1Q7Z699 444 aa21.09■□□□□ 0.97
COL9A3-207ENST00000467819 PGBD5Q8N414 524 aa21.09■□□□□ 0.97
COL9A3-207ENST00000467819 CCNL2Q96S94 520 aaPredicted RBP21.09■□□□□ 0.97
COL9A3-207ENST00000467819 CARS2Q9HA77 564 aaKnown RBP21.09■□□□□ 0.97
COL9A3-207ENST00000467819 MRPL47Q9HD33 250 aaKnown RBP21.09■□□□□ 0.97
COL9A3-207ENST00000467819 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.09■□□□□ 0.97
COL9A3-207ENST00000467819 LOXL2Q9Y4K0 774 aa21.09■□□□□ 0.97
COL9A3-207ENST00000467819 PCDHGA7Q9Y5G6 932 aa21.09■□□□□ 0.97
COL9A3-207ENST00000467819 TENM4Q6N022 2769 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 A0A1W2PQC6 194 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 GOLGA6CA6NDK9 693 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 GOLGA6BA6NDN3 693 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 PDE2AO00408 941 aaPredicted RBP21.08■□□□□ 0.97
COL9A3-207ENST00000467819 HTRA2O43464 458 aaPredicted RBP21.08■□□□□ 0.97
COL9A3-207ENST00000467819 SOCS5O75159 536 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 PEX11BO96011 259 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 GOLGA6DP0CG33 693 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 MYBL1P10243 752 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 MYCLP1P12525 358 aaPredicted RBP21.08■□□□□ 0.97
COL9A3-207ENST00000467819 HSPA9P38646 679 aaKnown RBP21.08■□□□□ 0.97
COL9A3-207ENST00000467819 MAXP61244 160 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 HLTFQ14527 1009 aaKnown RBP eCLIP21.08■□□□□ 0.97
COL9A3-207ENST00000467819 TSR1Q2NL82 804 aaKnown RBP21.08■□□□□ 0.97
COL9A3-207ENST00000467819 POLNQ7Z5Q5 900 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 HEATR4Q86WZ0 1026 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 NAP1L5Q96NT1 182 aaPredicted RBP21.08■□□□□ 0.97
COL9A3-207ENST00000467819 CSPG4P5Q96PW8 444 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 NUDCD1Q96RS6 583 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 BPIFA3Q9BQP9 254 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 NOD2Q9HC29 1040 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 PHPT1Q9NRX4 125 aaPredicted RBP21.08■□□□□ 0.97
COL9A3-207ENST00000467819 GOLGA6AQ9NYA3 693 aa21.08■□□□□ 0.97
COL9A3-207ENST00000467819 CAPN8A6NHC0 703 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 MAFKO60675 156 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 HEXIM1O94992 359 aaKnown RBP21.07■□□□□ 0.96
COL9A3-207ENST00000467819 PNLIPP16233 465 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 ITIH1P19827 911 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 CR2P20023 1033 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 ETV3P41162 512 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 MAZP56270 477 aaKnown RBP21.07■□□□□ 0.96
COL9A3-207ENST00000467819 TRAF2Q12933 501 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 TGIF1Q15583 401 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 BBS5Q8N3I7 341 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 ATPAF2Q8N5M1 289 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 KIAA1524Q8TCG1 905 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 MGME1Q9BQP7 344 aa21.07■□□□□ 0.96
COL9A3-207ENST00000467819 A0A1B0GTH6 734 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 A0A1W2PQ67 120 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 RARAP10276 462 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 CYP2A6P11509 494 aaPredicted RBP21.06■□□□□ 0.96
COL9A3-207ENST00000467819 CCNB1P14635 433 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 LHCGRP22888 699 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 PTPRRQ15256 657 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 MAP9Q49MG5 647 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 BOLA3Q53S33 107 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 TDRD12Q587J7 1177 aaKnown RBP21.06■□□□□ 0.96
COL9A3-207ENST00000467819 PHF19Q5T6S3 580 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 TXNRD3NBQ6F5E7 133 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 TMPRSS9Q7Z410 1059 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 HSD11B1LQ7Z5J1 315 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 NSMCE1Q8WV22 266 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 SPOCK2Q92563 424 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 DTD2Q96FN9 168 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 ISCUQ9H1K1 167 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 SPATS2LQ9NUQ6 558 aaKnown RBP21.06■□□□□ 0.96
COL9A3-207ENST00000467819 PHTF1Q9UMS5 762 aa21.06■□□□□ 0.96
COL9A3-207ENST00000467819 NPIPB15A6NHN6 443 aaPredicted RBP21.05■□□□□ 0.96
COL9A3-207ENST00000467819 NUDT21O43809 227 aaKnown RBP21.05■□□□□ 0.96
COL9A3-207ENST00000467819 CEACAM5P06731 702 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 NFKBIAP25963 317 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 ETV5P41161 510 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 MMP13P45452 471 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 GNPDA1P46926 289 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 MAPK10P53779 464 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 ZFP36L1Q07352 338 aaKnown RBP21.05■□□□□ 0.96
COL9A3-207ENST00000467819 ILF3Q12906 894 aaKnown RBP eCLIP21.05■□□□□ 0.96
COL9A3-207ENST00000467819 SRSF6Q13247 344 aaKnown RBP21.05■□□□□ 0.96
COL9A3-207ENST00000467819 RAET1GQ6H3X3 334 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 TSPAN33Q86UF1 283 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 NRROSQ86YC3 692 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 GPBAR1Q8TDU6 330 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 ZDHHC1Q8WTX9 485 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 BTBD6Q96KE9 485 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 TEX101Q9BY14 249 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 GSDMCQ9BYG8 508 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms