RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SYT11Q9BT88 431 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 LRRC61Q9BV99 259 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 MAGEB5Q9BZ81 275 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 LRRN3Q9H3W5 708 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 WDR26Q9H7D7 661 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 SYNDIG1Q9H7V2 258 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 GPATCH2LQ9NWQ4 482 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 CWC15Q9P013 229 aaKnown RBP7.8□□□□□ -1.16
CD44-211ENST00000442151 GGT7Q9UJ14 662 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 MOSPD1Q9UJG1 213 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 APPL1Q9UKG1 709 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 PCDHB11Q9Y5F2 797 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 ENTPD2Q9Y5L3 495 aa7.8□□□□□ -1.16
CD44-211ENST00000442151 DNMT3AQ9Y6K1 912 aaPredicted RBP7.8□□□□□ -1.16
CD44-211ENST00000442151 DDX3XO00571 662 aaKnown RBP eCLIP7.79□□□□□ -1.16
CD44-211ENST00000442151 KLK10O43240 276 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 HTRA2O43464 458 aaPredicted RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 BUB1BO60566 1050 aaPredicted RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 GCATO75600 419 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 MPOP05164 745 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 KRT7P08729 469 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 SFTPCP11686 197 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 ZNF30P17039 623 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 TGM2P21980 687 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 MMP13P45452 471 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 EPHB1P54762 984 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 RPL26P61254 145 aaKnown RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 CXADRP78310 365 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 OGDHQ02218 1023 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 ITKQ08881 620 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 DPYSQ14117 519 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 SKOR2Q2VWA4 1001 aaPredicted RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 TAF1BQ53T94 588 aaPredicted RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 C3orf38Q5JPI3 329 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 CAVIN1Q6NZI2 390 aaKnown RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 POLNQ7Z5Q5 900 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 SPACA3Q8IXA5 215 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 SLC35F3Q8IY50 421 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 NRSN1Q8IZ57 195 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 AVL9Q8NBF6 648 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 CCDC112Q8NEF3 446 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 PDCD6IPQ8WUM4 868 aaKnown RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 FATE1Q969F0 183 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 NUS1Q96E22 293 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 HIC2Q96JB3 615 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 SRPK1Q96SB4 655 aaKnown RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 CMKLR1Q99788 373 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 RAD18Q9NS91 495 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 TRNAU1APQ9NX07 287 aaKnown RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 TAS2R14Q9NYV8 317 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 UVRAGQ9P2Y5 699 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 KLF15Q9UIH9 416 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 RALYQ9UKM9 306 aaKnown RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 CAPN11Q9UMQ6 739 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 RPL26L1Q9UNX3 145 aaKnown RBP7.79□□□□□ -1.16
CD44-211ENST00000442151 SATB2Q9UPW6 733 aa7.79□□□□□ -1.16
CD44-211ENST00000442151 LY6G6EA0A0G2JKS1 128 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 RGSL1A5PLK6 1076 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 RHPN2P1A8MT19 583 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 NTN3O00634 580 aaPredicted RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 PLD2O14939 933 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 NUDT21O43809 227 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 TNFSF15O95150 251 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ITGA2BP08514 1039 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 H2AFZP0C0S5 128 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 JMJD7P0C870 316 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 MYCLP1P12525 358 aaPredicted RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 SKILP12757 684 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 SLC2A4P14672 509 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ZFXP17010 805 aaPredicted RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 AMPD1P23109 780 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CD82P27701 267 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CCKBRP32239 447 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 NOP2P46087 812 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 GPR3P46089 330 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 FANCCQ00597 558 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 TLE3Q04726 772 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 VAC14Q08AM6 782 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 TRIM14Q14142 442 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 IFI16Q16666 785 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 C14orf28Q4W4Y0 310 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 LRRC73Q5JTD7 316 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ZFYVE27Q5T4F4 411 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CCDC70Q6NSX1 233 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ALKBH5Q6P6C2 394 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 H2AFVQ71UI9 128 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ZNF765Q7L2R6 523 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 RAB11FIP2Q7L804 512 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CCNJLQ8IV13 435 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ARHGAP12Q8IWW6 846 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 RBFAQ8N0V3 343 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 KCTD6Q8NC69 237 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 GPR156Q8NFN8 814 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 SCRN2Q96FV2 425 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ATXN7L3BQ96GX2 97 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CSPG4P5Q96PW8 444 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 MGME1Q9BQP7 344 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 POLR1EQ9GZS1 481 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 CLPBQ9H078 707 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ZMYND15Q9H091 742 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms