RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 CSRP1P21291 193 aaKnown RBP18.67■□□□□ 0.58
SHH-204ENST00000441114 CXCR5P32302 372 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 PTK2BQ14289 1009 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 FZD2Q14332 565 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 AGERQ15109 404 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 ZNF569Q5MCW4 686 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 ITPRIPL1Q6GPH6 555 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 RFLNAQ6ZTI6 216 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 PIP4P1Q86T03 277 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 IPMKQ8NFU5 416 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 TADA1Q96BN2 335 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 OXNAD1Q96HP4 312 aaPredicted RBP18.67■□□□□ 0.58
SHH-204ENST00000441114 TRIB3Q96RU7 358 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 APOOQ9BUR5 198 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 CARD9Q9H257 536 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 USP29Q9HBJ7 922 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 DNPEPQ9ULA0 475 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 BTBD3Q9Y2F9 522 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 PCDHGB2Q9Y5G2 931 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 C1orf232A0A0U1RR37 186 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 SPTY2D1-AS1A0A0U1RR47 76 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 FLRT2O43155 660 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 CEP104O60308 925 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 SLC4A1P02730 911 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 C1SP09871 688 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 EPHA8P29322 1005 aaPredicted RBP18.66■□□□□ 0.58
SHH-204ENST00000441114 TNNT3P45378 269 aaPredicted RBP18.66■□□□□ 0.58
SHH-204ENST00000441114 RXRGP48443 463 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 WNT3AP56704 352 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 YPEL5P62699 121 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 PTSQ03393 145 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 MTM1Q13496 603 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 SNX1Q13596 522 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 SLC14A2Q15849 920 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 KDELC1Q6UW63 502 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 PELI3Q8N2H9 469 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 SLC25A41Q8N5S1 370 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 FAM71DQ8N9W8 422 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 C1orf54Q8WWF1 131 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 DTD2Q96FN9 168 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 TMEM121Q9BTD3 319 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 GBA3Q9H227 469 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 GPR27Q9NS67 375 aa18.66■□□□□ 0.58
SHH-204ENST00000441114 SPTBN4Q9H254 2564 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 SPAARA0A1B0GVQ0 90 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 K7ESM1 405 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 PSMD11O00231 422 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 YKT6O15498 198 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 PCDHGA12O60330 932 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 NDST3O95803 873 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 ZNF30P17039 623 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 PSMB4P28070 264 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 EIF2B5Q13144 721 aaKnown RBP18.65■□□□□ 0.58
SHH-204ENST00000441114 PRPSAP1Q14558 356 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 PNCKQ6P2M8 343 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 ENPP7Q6UWV6 458 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 PARGQ86W56 976 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 CBARPQ8N350 705 aaPredicted RBP18.65■□□□□ 0.58
SHH-204ENST00000441114 SLC35F6Q8N357 371 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 EID2Q8N6I1 236 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 SLC35B2Q8TB61 432 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 SAP25Q8TEE9 199 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 MRGPRX2Q96LB1 330 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 SPATA13Q96N96 652 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 SHOC2Q9UQ13 582 aa18.65■□□□□ 0.58
SHH-204ENST00000441114 CABIN1Q9Y6J0 2220 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 USP27XA6NNY8 438 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 TOR1BO14657 336 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 CEACAM1P13688 526 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 JUNDP17535 347 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 GRK6P43250 576 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 CHRNA4P43681 627 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 STC1P52823 247 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 GEMP55040 296 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 CCDC173Q0VFZ6 552 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 MPP3Q13368 585 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 FAXCQ5TGI0 409 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 RAET1GQ6H3X3 334 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 DBX2Q6ZNG2 339 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 ARHGEF18Q6ZSZ5 1173 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 LYSMD3Q7Z3D4 306 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 RD3Q7Z3Z2 195 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 TECPR1Q7Z6L1 1165 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 TAB3Q8N5C8 712 aaPredicted RBP18.64■□□□□ 0.57
SHH-204ENST00000441114 CCHCR1Q8TD31 782 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 FICDQ9BVA6 458 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 FSD1LQ9BXM9 530 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 ABCG8Q9H221 673 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 UCKL1Q9NWZ5 548 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 KLF15Q9UIH9 416 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 PCOLCE2Q9UKZ9 415 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 PYCARDQ9ULZ3 195 aa18.64■□□□□ 0.57
SHH-204ENST00000441114 CACNB4O00305 520 aaPredicted RBP18.63■□□□□ 0.57
SHH-204ENST00000441114 SCAMP1O15126 338 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 LIASO43766 372 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 ANXA9O76027 345 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 FGGP02679 453 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 CSF2P04141 144 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 DGKAP23743 735 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 HTR1BP28222 390 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms