RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 PRKD2Q9BZL6 878 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 SLC25A51Q9H1U9 297 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 ZBTB26Q9HCK0 441 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 ADA2Q9NZK5 511 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 GMIPQ9P107 970 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 PDP2Q9P2J9 529 aa10.71□□□□□ -0.7
CUX1-205ENST00000425244 PRPF19Q9UMS4 504 aaKnown RBP10.71□□□□□ -0.7
CUX1-205ENST00000425244 MTF2Q9Y483 593 aaPredicted RBP10.71□□□□□ -0.7
CUX1-205ENST00000425244 TNRC18O15417 2968 aaPredicted RBP10.7□□□□□ -0.7
CUX1-205ENST00000425244 TRPC5OSA6NMA1 111 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 ALDH1A3P47895 512 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 RENBPP51606 427 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 HK2P52789 917 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 TAF10Q12962 218 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 CEACAM7Q14002 265 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 KLC3Q6P597 504 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 KDELC1Q6UW63 502 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 SETD3Q86TU7 594 aaPredicted RBP10.7□□□□□ -0.7
CUX1-205ENST00000425244 RYBPQ8N488 228 aaPredicted RBP10.7□□□□□ -0.7
CUX1-205ENST00000425244 PCDH20Q8N6Y1 951 aaKnown RBP10.7□□□□□ -0.7
CUX1-205ENST00000425244 ICA1LQ8NDH6 482 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 BHLHE22Q8NFJ8 381 aaPredicted RBP10.7□□□□□ -0.7
CUX1-205ENST00000425244 PPP1R2P1Q96PQ5 205 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 CCDC28BQ9BUN5 200 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 EFCAB1Q9HAE3 211 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 TNFRSF12AQ9NP84 129 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 MTRRQ9UBK8 725 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 DTNAQ9Y4J8 743 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 INSL6Q9Y581 213 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 KCTD3Q9Y597 815 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 MYO16Q9Y6X6 1858 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 SDHDO14521 159 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 PRRG1O14668 218 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 ZSCAN9O15535 394 aaPredicted RBP10.7□□□□□ -0.7
CUX1-205ENST00000425244 NPHS1O60500 1241 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 GJB3O75712 270 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 UQCRBP14927 111 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 VCLP18206 1134 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 DPP6P42658 865 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 POLE2P56282 527 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 PRAMEP78395 509 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 SULT2A1Q06520 285 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 LAMB3Q13751 1172 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 TAF12Q16514 161 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 PPP1R3AQ16821 1122 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 AGAP9Q5VTM2 703 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 BEND5Q7L4P6 421 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 PIM3Q86V86 326 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 HERC6Q8IVU3 1022 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 PQLC1Q8N2U9 271 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 CPSF7Q8N684 471 aaKnown RBP10.7□□□□□ -0.7
CUX1-205ENST00000425244 SPPL2BQ8TCT7 592 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 ANKRD49Q8WVL7 239 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 HDAC10Q969S8 669 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 LRGUKQ96M69 825 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 ALG9Q9H6U8 611 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 MRM3Q9HC36 420 aaKnown RBP10.7□□□□□ -0.7
CUX1-205ENST00000425244 TRPC7Q9HCX4 862 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 MRPL17Q9NRX2 175 aaKnown RBP10.7□□□□□ -0.7
CUX1-205ENST00000425244 CRYL1Q9Y2S2 319 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 ASB3Q9Y575 518 aa10.7□□□□□ -0.7
CUX1-205ENST00000425244 A8MT66 165 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 TBC1D4O60343 1298 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 SEC24AO95486 1093 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 ATF6P18850 670 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 YWHAQP27348 245 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 HTR7P34969 479 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 CTNNB1P35222 781 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 POLD2P49005 469 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 ARSDP51689 593 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 MS4A2Q01362 244 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 ZNF423Q2M1K9 1284 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 TECRLQ5HYJ1 363 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 ARTNQ5T4W7 220 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 HECTD2Q5U5R9 776 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 AFMIDQ63HM1 303 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 RAP1GAP2Q684P5 730 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 FAM109BQ6ICB4 259 aaPredicted RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 CUZD1Q86UP6 607 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 SPATA24Q86W54 205 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 APLFQ8IW19 511 aaPredicted RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 PGAM4Q8N0Y7 254 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 OR13J1Q8NGT2 312 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 CEP70Q8NHQ1 597 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 CALML6Q8TD86 181 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 PDCD6IPQ8WUM4 868 aaKnown RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 IMP4Q96G21 291 aaKnown RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 ZYG11BQ9C0D3 744 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 ZNF385DQ9H6B1 395 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 COPS7BQ9H9Q2 264 aaPredicted RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 UXTQ9UBK9 157 aaPredicted RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 IPO13O94829 963 aaKnown RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 PEX11BO96011 259 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 LTA4HP09960 611 aaKnown RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 PIRTP0C851 137 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 HDCP19113 662 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 HNRNPDQ14103 355 aaKnown RBP10.69□□□□□ -0.7
CUX1-205ENST00000425244 PTPRCAPQ14761 206 aa10.69□□□□□ -0.7
CUX1-205ENST00000425244 PIGGQ5H8A4 983 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms