RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 PIRTP0C851 137 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 HOXB2P14652 356 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 C5AR1P21730 350 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 PSMA3P25788 255 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 PPARGP37231 505 aaPredicted RBP13.7□□□□□ -0.22
VAPB-202ENST00000395802 NEK3P51956 506 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 ZNF140P52738 457 aaPredicted RBP13.7□□□□□ -0.22
VAPB-202ENST00000395802 ZBTB16Q05516 673 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 HSP90AA5PQ58FG0 334 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 TNFAIP8L3Q5GJ75 292 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 ZNF776Q68DI1 518 aaPredicted RBP13.7□□□□□ -0.22
VAPB-202ENST00000395802 TRMT10BQ6PF06 316 aaKnown RBP13.7□□□□□ -0.22
VAPB-202ENST00000395802 ADGRD1Q6QNK2 874 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 AFTPHQ6ULP2 937 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 MARK2Q7KZI7 788 aaKnown RBP13.7□□□□□ -0.22
VAPB-202ENST00000395802 SDCCAG8Q86SQ7 713 aaPredicted RBP13.7□□□□□ -0.22
VAPB-202ENST00000395802 MMAAQ8IVH4 418 aaKnown RBP13.7□□□□□ -0.22
VAPB-202ENST00000395802 CNTN4Q8IWV2 1026 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 IL17RCQ8NAC3 791 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 OR4K2Q8NGD2 314 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 TLCD1Q96CP7 247 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 MTBPQ96DY7 904 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 ZNF778Q96MU6 729 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 TTC1Q99614 292 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 MFSD1Q9H3U5 465 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 MTG2Q9H4K7 406 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 PLAC1Q9HBJ0 212 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 PRDM6Q9NQX0 595 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 APPL1Q9UKG1 709 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 HCN2Q9UL51 889 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 VPS9D1Q9Y2B5 631 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 SPO11Q9Y5K1 396 aa13.7□□□□□ -0.22
VAPB-202ENST00000395802 RGSL1A5PLK6 1076 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 H7C0S8 307 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 PSMD11O00231 422 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 ATG13O75143 517 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 KLF8O95600 359 aaPredicted RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 PRKCGP05129 697 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 ALPIP09923 528 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 ERVK-10P10266 1014 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 VIPR1P32241 457 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 SLCO1A2P46721 670 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 ARCN1P48444 511 aaKnown RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 SATB1Q01826 763 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 AARS2Q5JTZ9 985 aaKnown RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 GRTP1Q5TC63 336 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 NEPROQ6NW34 567 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 ERN2Q76MJ5 926 aaKnown RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 LYSMD3Q7Z3D4 306 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 CBARPQ8N350 705 aaPredicted RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 TXNDC5Q8NBS9 432 aaKnown RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 OR4L1Q8NH43 312 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 EZH1Q92800 747 aaPredicted RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.69□□□□□ -0.22
VAPB-202ENST00000395802 PBXIP1Q96AQ6 731 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 VOPP1Q96AW1 172 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 CDKN2AIPNLQ96HQ2 116 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 TRIM56Q9BRZ2 755 aaKnown RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 DHRS4Q9BTZ2 278 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 EURLQ9NYK6 297 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 PKD2L2Q9NZM6 624 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 IL17CQ9P0M4 197 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 SENP1Q9P0U3 644 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 LGALS13Q9UHV8 139 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 CCDC78A2IDD5 438 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 NPIPB15A6NHN6 443 aaPredicted RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 SMIM23A6NLE4 172 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 TIMP2P16035 220 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 GP5P40197 560 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 CST6Q15828 149 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 TTC31Q49AM3 519 aaPredicted RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 FASTKD1Q53R41 847 aaKnown RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 TEDDM1Q5T9Z0 273 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 LRRC66Q68CR7 880 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 CRTC1Q6UUV9 634 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 DPPA4Q7L190 304 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 ZSWIM9Q86XI8 627 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 TTC30BQ8N4P2 665 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 RPLP0P6Q8NHW5 317 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 HDAC10Q969S8 669 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 DNAJC1Q96KC8 554 aaKnown RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 PCDH12Q9NPG4 1184 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 IARS2Q9NSE4 1012 aaKnown RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 KCTD5Q9NXV2 234 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 BCCIPQ9P287 314 aaKnown RBP eCLIP13.69□□□□□ -0.224e-12■■■■■ 38.6
VAPB-202ENST00000395802 SLC2A6Q9UGQ3 507 aa13.69□□□□□ -0.22
VAPB-202ENST00000395802 NOVA2Q9UNW9 492 aaKnown RBP13.69□□□□□ -0.22
VAPB-202ENST00000395802 NEMP1O14524 444 aa13.68□□□□□ -0.22
VAPB-202ENST00000395802 AURKAO14965 403 aa13.68□□□□□ -0.22
VAPB-202ENST00000395802 SLC4A1P02730 911 aa13.68□□□□□ -0.22
VAPB-202ENST00000395802 DNTTP04053 509 aa13.68□□□□□ -0.22
VAPB-202ENST00000395802 ADRB3P13945 408 aa13.68□□□□□ -0.22
VAPB-202ENST00000395802 KRT15P19012 456 aa13.68□□□□□ -0.22
VAPB-202ENST00000395802 NR1D1P20393 614 aa13.68□□□□□ -0.22
VAPB-202ENST00000395802 GCAP28676 217 aa13.68□□□□□ -0.22
VAPB-202ENST00000395802 SPRP35270 261 aaPredicted RBP13.68□□□□□ -0.22
VAPB-202ENST00000395802 WASP42768 502 aa13.68□□□□□ -0.22
VAPB-202ENST00000395802 PSMD8P48556 350 aa13.68□□□□□ -0.22
VAPB-202ENST00000395802 CSE1LP55060 971 aaKnown RBP13.68□□□□□ -0.22
VAPB-202ENST00000395802 STARD6P59095 220 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms