RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SLC6A17Q9H1V8 727 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 CAPN10Q9HC96 672 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 SLC17A6Q9P2U8 582 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 CLCA2Q9UQC9 943 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 PLXNB2O15031 1838 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 A0A0G2JND7 137 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 MATN3O15232 486 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 PRPF4O43172 522 aaKnown RBP eCLIP10.33□□□□□ -0.76
COL6A3-205ENST00000392004 LEFTY1O75610 366 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 PRNPP04156 253 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 HMGA1P17096 107 aaKnown RBP10.33□□□□□ -0.76
COL6A3-205ENST00000392004 KRT4P19013 534 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 NCF2P19878 526 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-205ENST00000392004 MC4RP32245 332 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 VHLP40337 213 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 ARMC6Q6NXE6 501 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 DPY19L2P1Q6NXN4 242 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 DDIASQ8IXT1 998 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.33□□□□□ -0.76
COL6A3-205ENST00000392004 UNC5BQ8IZJ1 945 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 OR10G6Q8NH81 332 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 SCAMP4Q969E2 229 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 AZIN2Q96A70 460 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 ACOX2Q99424 681 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 HERPUD2Q9BSE4 406 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 GPR174Q9BXC1 333 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 TBC1D10AQ9BXI6 508 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 KCNK12Q9HB15 430 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 ITM2BQ9Y287 266 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 ARL5AQ9Y689 179 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 LAMA3Q16787 3333 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 HACD1B0YJ81 288 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 F8W8V4 182 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PEX11AO75192 247 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 GJB3O75712 270 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 ABLIM3O94929 683 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PYGLP06737 847 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 TPBGLP0DKB5 382 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 IL9P15248 144 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 TAC1P20366 129 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PTDSS1P48651 473 aaKnown RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 SGSHP51688 502 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 MORF4L2Q15014 288 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 RBBP7Q16576 425 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 DUSP6Q16828 381 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 MAP7D1Q3KQU3 841 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 SPDYAQ5MJ70 313 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 ESRP1Q6NXG1 681 aaKnown RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 CALML6Q8TD86 181 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PIGKQ92643 395 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 VAT1Q99536 393 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 THEGQ9P2T0 379 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 SUN2Q9UH99 717 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 STARD13Q9Y3M8 1113 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 CFAP20Q9Y6A4 193 aaKnown RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 TRPM7Q96QT4 1865 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 CLDN7O95471 211 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 F11P03951 625 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 ACADSP16219 412 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 TSPAN8P19075 237 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 RGS4P49798 205 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 ASPHQ12797 758 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 SLC10A2Q12908 348 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PTK6Q13882 451 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PTPRRQ15256 657 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 TNFAIP8L3Q5GJ75 292 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 IRGCQ6NXR0 463 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 NUDCD3Q8IVD9 361 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PQLC3Q8N755 202 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 SNX31Q8N9S9 440 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 OR2AP1Q8NGE2 309 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 ELMO1Q92556 727 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 SHDQ96IW2 340 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 GDF15Q99988 308 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PKD2L2Q9NZM6 624 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 SIRPGQ9P1W8 387 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 RUVBL2Q9Y230 463 aaKnown RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 NUP205Q92621 2012 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 TCRBV7S3A2A0A539 114 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 HNRNPCL1O60812 293 aaKnown RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 LPOP22079 712 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 MAPKAPK2P49137 400 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 GALK1P51570 392 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PLIN5Q00G26 463 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 BTKQ06187 659 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 MTA1Q13330 715 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 HNRNPDQ14103 355 aaKnown RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 UGP2Q16851 508 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 CARD16Q5EG05 197 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PRPF38BQ5VTL8 546 aaKnown RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 Q6ZVL8 140 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 CLDN19Q8N6F1 224 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 ACDQ96AP0 544 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 UHRF1Q96T88 793 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 PAFAH2Q99487 392 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 TUBB6Q9BUF5 446 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 CAB39LQ9H9S4 337 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 NINJ2Q9NZG7 142 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms