RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 B3GALT6Q96L58 329 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 HSFY1Q96LI6 401 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 GATA5Q9BWX5 397 aaPredicted RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 EHD3Q9NZN3 535 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 ADAMTS6Q9UKP5 1117 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 SMIM28A0A1B0GU29 152 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 PMM2O15305 246 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 GOT2P00505 430 aaKnown RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 TYMPP19971 482 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 GLUD2P49448 558 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 RAB27AP51159 221 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 TEX44Q53QW1 395 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 CEP78Q5JTW2 689 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 EPGNQ6UW88 154 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 SYT12Q8IV01 421 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 PLEKHA8Q96JA3 519 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 SH3GL1Q99961 368 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 COLEC11Q9BWP8 271 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 LIN28AQ9H9Z2 209 aaKnown RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 FARP1Q9Y4F1 1045 aaPredicted RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 F8W810 466 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 H3BSA7 217 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 LZTS3O60299 673 aaPredicted RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 DBTP11182 482 aaKnown RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 CD52P31358 61 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 GPD2P43304 727 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 PSMD7P51665 324 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 SLC18A2Q05940 514 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 TRIP4Q15650 581 aaPredicted RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 INSCQ1MX18 579 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 TMEM63BQ5T3F8 832 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 TAC4Q86UU9 113 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 GPC2Q8N158 579 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 FSTL5Q8N475 847 aaPredicted RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 GPR156Q8NFN8 814 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 KLRG1Q96E93 195 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 FIZ1Q96SL8 496 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 ARL15Q9NXU5 204 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 GMIPQ9P107 970 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 FBXO5Q9UKT4 447 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 PDLIM1O00151 329 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 TRIM24O15164 1050 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 S100A3P33764 101 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 RFX3P48380 749 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 FGD3Q5JSP0 725 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 DGKKQ5KSL6 1271 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 ZNF540Q8NDQ6 660 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 OR7A2PQ8NGA2 310 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 HBEGFQ99075 208 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 TIMMDC1Q9NPL8 285 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 USP2O75604 605 aaPredicted RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 MSH3P20585 1137 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 ZNF252P-AS1Q0IIN9 211 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 MAD2L1Q13257 205 aaPredicted RBP6.55□□□□□ -1.36
SMC1A-202ENST00000375340 PPIL2Q13356 520 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 HFE2Q6ZVN8 426 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 ANKS3Q6ZW76 656 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 LZTR1Q8N653 840 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 ZNHIT2Q9UHR6 403 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 ST3GAL5Q9UNP4 418 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 GMPPBQ9Y5P6 360 aa6.55□□□□□ -1.36
SMC1A-202ENST00000375340 NEMP2A6NFY4 417 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 EPN2O95208 641 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 GSTM1P09488 218 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 MTTPP55157 894 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 PTPRNQ16849 979 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 TJAP1Q5JTD0 557 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 PLD6Q8N2A8 252 aaKnown RBP6.54□□□□□ -1.36
SMC1A-202ENST00000375340 NELL1Q92832 810 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 PCED1BQ96HM7 432 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 CDK15Q96Q40 435 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 TRMT13Q9NUP7 481 aaKnown RBP6.54□□□□□ -1.36
SMC1A-202ENST00000375340 OXSMQ9NWU1 459 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 ADGRE2Q9UHX3 823 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 GNPTGQ9UJJ9 305 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 VWA7Q9Y334 891 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 ARFGEF1Q9Y6D6 1849 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 SMPD1P17405 629 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 IFNA8P32881 189 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 SLC5A3P53794 718 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 LIPEQ05469 1076 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 CCNIQ14094 377 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 OGFOD2Q6N063 350 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 CAND1Q86VP6 1230 aaKnown RBP6.54□□□□□ -1.36
SMC1A-202ENST00000375340 VPS37AQ8NEZ2 397 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 TREHO43280 583 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 SNAP91O60641 907 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 TBL1XO60907 577 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 RNASEH1O60930 286 aaKnown RBP6.54□□□□□ -1.36
SMC1A-202ENST00000375340 C22orf31O95567 290 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 MYL4P12829 197 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 PSEN1P49768 467 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 RPS6KA3P51812 740 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 PPP1R3AQ16821 1122 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 TTC23LQ6PF05 361 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 TMC5Q6UXY8 1006 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 PIWIL4Q7Z3Z4 852 aaKnown RBP6.54□□□□□ -1.36
SMC1A-202ENST00000375340 ZNF605Q86T29 641 aa6.54□□□□□ -1.36
SMC1A-202ENST00000375340 HTRA1Q92743 480 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms