RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 ATP1A4Q13733 1029 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 KRT74Q7RTS7 529 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 APTXQ7Z2E3 356 aaKnown RBP11.76□□□□□ -0.53
COL9A1-202ENST00000357250 PHF10Q8WUB8 498 aaKnown RBP11.76□□□□□ -0.53
COL9A1-202ENST00000357250 CPT1BQ92523 772 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 NACC2Q96BF6 587 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 MRPL45Q9BRJ2 306 aaKnown RBP11.76□□□□□ -0.53
COL9A1-202ENST00000357250 SDCBP2Q9H190 292 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 GBA3Q9H227 469 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 BAZ2AQ9UIF9 1905 aaKnown RBP11.76□□□□□ -0.53
COL9A1-202ENST00000357250 SMIM28A0A1B0GU29 152 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 LINC00854A0A1B0GVQ3 168 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 A0A1W2PPM1 405 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 SLC22A2O15244 555 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 GSC2O15499 205 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 NDST3O95803 873 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 GPR1P46091 355 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 IDH2P48735 452 aaKnown RBP11.76□□□□□ -0.53
COL9A1-202ENST00000357250 TRIM25Q14258 630 aaKnown RBP11.76□□□□□ -0.53
COL9A1-202ENST00000357250 ZNF57Q68EA5 555 aaPredicted RBP11.76□□□□□ -0.53
COL9A1-202ENST00000357250 PMF1Q6P1K2 205 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 DENND1CQ8IV53 801 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 LINGO1Q96FE5 620 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 KCTD5Q9NXV2 234 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 IKZF3Q9UKT9 509 aa11.76□□□□□ -0.53
COL9A1-202ENST00000357250 CST1P01037 141 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 PKMP14618 531 aaKnown RBP11.75□□□□□ -0.53
COL9A1-202ENST00000357250 LIMK2P53671 638 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 TRAP1Q12931 704 aaKnown RBP11.75□□□□□ -0.53
COL9A1-202ENST00000357250 CTBP1Q13363 440 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 GCNT7Q6ZNI0 430 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.75□□□□□ -0.53
COL9A1-202ENST00000357250 C12orf29Q8N999 325 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 STYXQ8WUJ0 223 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 TLCD1Q96CP7 247 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 NDNQ99608 321 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 ERVK-5Q9HDB9 667 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 AP4B1Q9Y6B7 739 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 RFXANKO14593 260 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 OR6A2O95222 327 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 ASMTP46597 345 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 UGT2B15P54855 530 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 UBAP2LQ14157 1087 aaKnown RBP11.75□□□□□ -0.53
COL9A1-202ENST00000357250 TAF5Q15542 800 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 CYP1B1Q16678 543 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 RNASEH2BQ5TBB1 312 aaKnown RBP11.75□□□□□ -0.53
COL9A1-202ENST00000357250 TAPT1Q6NXT6 567 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 FAM20CQ8IXL6 584 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 NETO2Q8NC67 525 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 VPS35Q96QK1 796 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 RACGAP1Q9H0H5 632 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 PTPRHQ9HD43 1115 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 PNPLA8Q9NP80 782 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 PCDHA2Q9Y5H9 948 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 CNTNAP1P78357 1384 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 TBC1D3BA6NDS4 549 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 H3BNX3 289 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 XKR6Q5GH73 641 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 TMC5Q6UXY8 1006 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 ANKRD49Q8WVL7 239 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 AP3S1Q92572 193 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 PANX1Q96RD7 426 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 HNRNPABQ99729 332 aaKnown RBP11.75□□□□□ -0.53
COL9A1-202ENST00000357250 POLR1BQ9H9Y6 1135 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.75□□□□□ -0.53
COL9A1-202ENST00000357250 EVA1BQ9NVM1 165 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 FBXO10Q9UK96 956 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 SQORQ9Y6N5 450 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 MYO9BQ13459 2157 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 MC4RP32245 332 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 SCNN1AP37088 669 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 SLC7A2P52569 658 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 PNLIPRP1P54315 467 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 PFKPQ01813 784 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 PTSQ03393 145 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 NDUFA5Q16718 116 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 ARHGAP36Q6ZRI8 547 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 PGAM4Q8N0Y7 254 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 TMEM199Q8N511 208 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 REXO5Q96IC2 774 aaKnown RBP11.75□□□□□ -0.53
COL9A1-202ENST00000357250 OMDQ99983 421 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 DGCR6LQ9BY27 220 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 SLC25A51Q9H1U9 297 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 SALL4Q9UJQ4 1053 aa11.75□□□□□ -0.53
COL9A1-202ENST00000357250 CCNDBP1O95273 360 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 OGNP20774 298 aaKnown RBP11.74□□□□□ -0.53
COL9A1-202ENST00000357250 MAPKAPK2P49137 400 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 TPGS1Q6ZTW0 290 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 OR52K2Q8NGK3 314 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 ASZ1Q8WWH4 475 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 DGCR14Q96DF8 476 aaKnown RBP11.74□□□□□ -0.53
COL9A1-202ENST00000357250 OR52E6Q96RD3 313 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 SEZ6LQ9BYH1 1024 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 SLC17A7Q9P2U7 560 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 DMTF1Q9Y222 760 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 RGPD1P0DJD0 1748 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 PRR5-ARHGAP8B1AHC4 643 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 MFN2O95140 757 aa11.74□□□□□ -0.53
COL9A1-202ENST00000357250 CDK9P50750 372 aaKnown RBP11.74□□□□□ -0.53
COL9A1-202ENST00000357250 ARHGAP8P85298 464 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms