RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.65■□□□□ 0.429e-8■□□□□ 10.8
SMAD4-201ENST00000342988 ITGA11Q9UKX5 1188 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 ENTPD5O75356 428 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 APLP1P51693 650 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 TBX4P57082 545 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 C1QBPQ07021 282 aaKnown RBP17.65■□□□□ 0.42
SMAD4-201ENST00000342988 FASTKD3Q14CZ7 662 aaKnown RBP17.65■□□□□ 0.42
SMAD4-201ENST00000342988 PHC3Q8NDX5 983 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 HDAC2Q92769 488 aaKnown RBP17.65■□□□□ 0.42
SMAD4-201ENST00000342988 SERPINB11Q96P15 392 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 VAT1Q99536 393 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 ACAT2Q9BWD1 397 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 RETREG1Q9H6L5 497 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 MED31Q9Y3C7 131 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 ZNF451Q9Y4E5 1061 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 PCDHB9Q9Y5E1 797 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 PMF1-BGLAPU3KQ54 211 aa17.65■□□□□ 0.42
SMAD4-201ENST00000342988 RAP1GAP2Q684P5 730 aa17.64■□□□□ 0.42
SMAD4-201ENST00000342988 NUP54Q7Z3B4 507 aa17.64■□□□□ 0.42
SMAD4-201ENST00000342988 PANX1Q96RD7 426 aa17.64■□□□□ 0.42
SMAD4-201ENST00000342988 TM9SF3Q9HD45 589 aa17.64■□□□□ 0.42
SMAD4-201ENST00000342988 KLQ9UEF7 1012 aa17.64■□□□□ 0.42
SMAD4-201ENST00000342988 A0A096LPK6 155 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 DNAJA2O60884 412 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 RAB4AP20338 218 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 PGDP52209 483 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 VLDLRP98155 873 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 SCGB1C1Q8TD33 95 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 GZMAP12544 262 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 PCSK2P16519 638 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 CFL1P23528 166 aaKnown RBP17.64■□□□□ 0.41
SMAD4-201ENST00000342988 SATL1Q86VE3 508 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 RANBP3LQ86VV4 465 aaPredicted RBP17.64■□□□□ 0.41
SMAD4-201ENST00000342988 KAT2AQ92830 837 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 RHBDF1Q96CC6 855 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 STRBPQ96SI9 672 aaKnown RBP17.64■□□□□ 0.41
SMAD4-201ENST00000342988 APBA2Q99767 749 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 IFNA10P01566 189 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 TMEM44Q2T9K0 475 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 ZIK1Q3SY52 487 aaPredicted RBP17.64■□□□□ 0.41
SMAD4-201ENST00000342988 CHSY3Q70JA7 882 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 DNAAF5Q86Y56 855 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 E2F3O00716 465 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 NADKO95544 446 aaPredicted RBP17.64■□□□□ 0.41
SMAD4-201ENST00000342988 OTCP00480 354 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 NTRK1P04629 796 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 PSKH1P11801 424 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 ARSKQ6UWY0 536 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 PI16Q6UXB8 463 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 EFCAB3Q8N7B9 438 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 OR7D4Q8NG98 312 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 MRPL57Q9BQC6 102 aaKnown RBP17.64■□□□□ 0.41
SMAD4-201ENST00000342988 RNPEPL1Q9HAU8 725 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 C19orf12Q9NSK7 152 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 SPHKAPQ2M3C7 1700 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 FADS2P1A8MWK0 482 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 CCR3P51677 355 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 RAB15P59190 212 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 CREMQ03060 361 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 ARRDC4Q8NCT1 418 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 HELQQ8TDG4 1101 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 METTL21AQ8WXB1 218 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 MRPL9Q9BYD2 267 aaKnown RBP17.64■□□□□ 0.41
SMAD4-201ENST00000342988 FAM105AQ9NUU6 356 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 ZNF565Q8N9K5 539 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 LSM14AQ8ND56 463 aaKnown RBP17.64■□□□□ 0.41
SMAD4-201ENST00000342988 GNG13Q9P2W3 67 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 PEX16Q9Y5Y5 336 aa17.64■□□□□ 0.41
SMAD4-201ENST00000342988 HMGXB3Q12766 1538 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 A0A075B6Q4 140 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 SLC12A8A0AV02 714 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 RFXANKO14593 260 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 JCHAINP01591 159 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 AGPAT5Q9NUQ2 364 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.63■□□□□ 0.41
SMAD4-201ENST00000342988 TMEM260Q9NX78 707 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 RCOR3Q9P2K3 495 aaPredicted RBP17.63■□□□□ 0.41
SMAD4-201ENST00000342988 ENDOD1O94919 500 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 ZSCAN5CA6NGD5 496 aaPredicted RBP17.63■□□□□ 0.41
SMAD4-201ENST00000342988 FGF10O15520 208 aaPredicted RBP17.63■□□□□ 0.41
SMAD4-201ENST00000342988 FSBPO95073 299 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 XKR6Q5GH73 641 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 DOK6Q6PKX4 331 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 LINGO2Q7L985 606 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 CAVIN3Q969G5 261 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 C5orf34Q96MH7 638 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 ZSWIM3Q96MP5 696 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 ZSCAN5AQ9BUG6 496 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 POLR1EQ9GZS1 481 aaKnown RBP17.63■□□□□ 0.41
SMAD4-201ENST00000342988 DNMT3LQ9UJW3 386 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 CDC42BPAQ5VT25 1732 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 HCN1O60741 890 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 TACSTD2P09758 323 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 ELP6Q0PNE2 266 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 SNAPC1Q16533 368 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 BEND7Q8N7W2 519 aaPredicted RBP17.63■□□□□ 0.41
SMAD4-201ENST00000342988 NPAS2Q99743 824 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 TMEM27Q9HBJ8 222 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 PCYT1BQ9Y5K3 369 aaPredicted RBP17.63■□□□□ 0.41
SMAD4-201ENST00000342988 GRIN2AQ12879 1464 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms