RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 RP9Q8TA86 221 aaKnown RBP10.93□□□□□ -0.66
LSM3-201ENST00000306024 SLC35F5Q8WV83 523 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 TOP1MTQ969P6 601 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 SDCCAG3Q96C92 435 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 IGSF21Q96ID5 467 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 SIAEQ9HAT2 523 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 TRIM39Q9HCM9 518 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 DNAJC28Q9NX36 388 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 SEPT10Q9P0V9 454 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 RABL2BQ9UNT1 228 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 ERGIC3Q9Y282 383 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 V9GYQ6 96 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 PCNTO95613 3336 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 SNPHO15079 494 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 GABBR2O75899 941 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 EFEMP1Q12805 493 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 ZNF362Q5T0B9 420 aaPredicted RBP10.93□□□□□ -0.66
LSM3-201ENST00000306024 DRICH1Q6PGQ1 229 aaPredicted RBP10.93□□□□□ -0.66
LSM3-201ENST00000306024 IQCF2Q8IXL9 164 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 TNS4Q8IZW8 715 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 CBR4Q8N4T8 237 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 GLMNQ92990 594 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 PCDHAC1Q9H158 963 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 WDCPQ9H6R7 721 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 ABCB10Q9NRK6 738 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 HACD3Q9P035 362 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 KIAA0355O15063 1070 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 IL1BP01584 269 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 POLR2EP19388 210 aaKnown RBP10.93□□□□□ -0.66
LSM3-201ENST00000306024 NOS2P35228 1153 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 GRIA3P42263 894 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 YAP1P46937 504 aaKnown RBP10.93□□□□□ -0.66
LSM3-201ENST00000306024 NME5P56597 212 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 PSME3P61289 254 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 COPZ1P61923 177 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 PLCL1Q15111 1095 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 ELMSAN1Q6PJG2 1045 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 ZNF276Q8N554 614 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 TRUB1Q8WWH5 349 aaKnown RBP10.93□□□□□ -0.66
LSM3-201ENST00000306024 CGREF1Q99674 301 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 ACSS2Q9NR19 701 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 CYTH4Q9UIA0 394 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 POU2F3Q9UKI9 436 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 TRIP11Q15643 1979 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 H3BMQ9 156 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 TRDMT1O14717 391 aaKnown RBP10.92□□□□□ -0.66
LSM3-201ENST00000306024 SRP72O76094 671 aaKnown RBP10.92□□□□□ -0.66
LSM3-201ENST00000306024 BMP10O95393 424 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 MAGP20916 626 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 EPHB3P54753 998 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 DSC1Q08554 894 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 RALGDSQ12967 914 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 STX5Q13190 355 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 TRAF7Q6Q0C0 670 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 CHST15Q7LFX5 561 aaPredicted RBP10.92□□□□□ -0.66
LSM3-201ENST00000306024 PGAM4Q8N0Y7 254 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 DCLK2Q8N568 766 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 OMA1Q96E52 524 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 COG8Q96MW5 612 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 CERS4Q9HA82 394 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 AP4E1Q9UPM8 1137 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 NOX1Q9Y5S8 564 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 C16orf96A6NNT2 1141 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 APOA1P02647 267 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 CXCL10P02778 98 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 CD48P09326 243 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 PIM1P11309 404 aaPredicted RBP10.92□□□□□ -0.66
LSM3-201ENST00000306024 IST1P53990 364 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 TPI1P60174 286 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 POLD3Q15054 466 aaPredicted RBP10.92□□□□□ -0.66
LSM3-201ENST00000306024 SF3B4Q15427 424 aaKnown RBP eCLIP10.92□□□□□ -0.66
LSM3-201ENST00000306024 MAPRE2Q15555 327 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 PLPP4Q5VZY2 271 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 DHFR2Q86XF0 187 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 SCAMP5Q8TAC9 235 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 TBC1D15Q8TC07 691 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 LPGAT1Q92604 370 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 TCF12Q99081 682 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 SMOQ99835 787 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 C20orf27Q9GZN8 174 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 TRPM5Q9NZQ8 1165 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 RIMS3Q9UJD0 308 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 FAM149AA5PLN7 773 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 M0QZQ0 153 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 GABRDO14764 452 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 CLIC3O95833 236 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 F9P00740 461 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 CSH1P0DML2 217 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 CSH2P0DML3 217 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 FASP25445 335 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 CDH5P33151 784 aaPredicted RBP10.92□□□□□ -0.66
LSM3-201ENST00000306024 LSM3P62310 102 aaKnown RBP10.92□□□□□ -0.66
LSM3-201ENST00000306024 PFKPQ01813 784 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 CDK18Q07002 472 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 RAB39AQ14964 217 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 SLC9B1Q4ZJI4 515 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 PAGE2BQ5JRK9 111 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 SLC26A9Q7LBE3 791 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 TMEM126BQ8IUX1 230 aa10.92□□□□□ -0.66
LSM3-201ENST00000306024 PSMA8Q8TAA3 256 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms