RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 CR2P20023 1033 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 PMLP29590 882 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 SUOXP51687 545 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 NFKB2Q00653 900 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 PLD1Q13393 1074 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.98■■□□□ 1.43
TRIM54-201ENST00000296098 RPS27LQ71UM5 84 aaKnown RBP23.98■■□□□ 1.43
TRIM54-201ENST00000296098 KYQ8NBH2 561 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 RMDN1Q96DB5 314 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 L3HYPDHQ96EM0 354 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 MYRFLQ96LU7 910 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 NSMCE3Q96MG7 304 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 TRMOQ9BU70 441 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 GSTO2Q9H4Y5 243 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 HSFX1Q9UBD0 423 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 AGO1Q9UL18 857 aaKnown RBP23.98■■□□□ 1.43
TRIM54-201ENST00000296098 ARIH1Q9Y4X5 557 aaPredicted RBP23.98■■□□□ 1.43
TRIM54-201ENST00000296098 YIPF1Q9Y548 306 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 CBX4O00257 560 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 BAG2O95816 211 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 CD1DP15813 335 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 IMPDH1P20839 514 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 ABL2P42684 1182 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 TAF12Q16514 161 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 TCHHL1Q5QJ38 904 aaPredicted RBP23.98■■□□□ 1.43
TRIM54-201ENST00000296098 ADGRF1Q5T601 910 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 GLT6D1Q7Z4J2 308 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 ZNF461Q8TAF7 563 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 PTERQ96BW5 349 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 CDKN2AIPNLQ96HQ2 116 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 MYCBPQ99417 103 aaPredicted RBP23.98■■□□□ 1.43
TRIM54-201ENST00000296098 AARSD1Q9BTE6 412 aaKnown RBP23.98■■□□□ 1.43
TRIM54-201ENST00000296098 TDRD1Q9BXT4 1180 aaKnown RBP23.98■■□□□ 1.43
TRIM54-201ENST00000296098 MEAF6Q9HAF1 191 aa23.98■■□□□ 1.43
TRIM54-201ENST00000296098 INTS10Q9NVR2 710 aaKnown RBP23.98■■□□□ 1.43
TRIM54-201ENST00000296098 TSPAN3O60637 253 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 SMIM24O75264 130 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 ZNF37AP17032 561 aaPredicted RBP23.97■■□□□ 1.43
TRIM54-201ENST00000296098 TIAL1Q01085 375 aaKnown RBP eCLIP23.97■■□□□ 1.43
TRIM54-201ENST00000296098 AFTPHQ6ULP2 937 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 ADGRG6Q86SQ4 1221 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 KIRREL3Q8IZU9 778 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 PELI3Q8N2H9 469 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 EFCAB3Q8N7B9 438 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 SLC26A7Q8TE54 656 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 RCN3Q96D15 328 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 TNFRSF12AQ9NP84 129 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 TBC1D30Q9Y2I9 924 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 LRCH1Q9Y2L9 728 aa23.97■■□□□ 1.43
TRIM54-201ENST00000296098 LIN7AO14910 233 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-201ENST00000296098 ABLIM3O94929 683 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 PARNO95453 639 aaKnown RBP23.96■■□□□ 1.43
TRIM54-201ENST00000296098 CES1P23141 567 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 ALDH1A3P47895 512 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 CYTH1Q15438 398 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 TAF1AQ15573 450 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-201ENST00000296098 ZNF678Q5SXM1 525 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 DSELQ8IZU8 1212 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 PYDC1Q8WXC3 89 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 TRMT2BQ96GJ1 504 aaKnown RBP23.96■■□□□ 1.43
TRIM54-201ENST00000296098 MUC3BQ9H195 1237 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 MYCP01106 439 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-201ENST00000296098 CDC25CP30307 473 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 KCNC1P48547 511 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 PDAP1Q13442 181 aaKnown RBP23.96■■□□□ 1.43
TRIM54-201ENST00000296098 BLMHQ13867 455 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 RNF219Q5W0B1 726 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-201ENST00000296098 TPGS2Q68CL5 300 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 C16orf59Q7L2K0 433 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 SERPINI1Q99574 410 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 ZNF184Q99676 751 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-201ENST00000296098 DDX50Q9BQ39 737 aaKnown RBP23.96■■□□□ 1.43
TRIM54-201ENST00000296098 KLF16Q9BXK1 252 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-201ENST00000296098 RNF38Q9H0F5 515 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 CXorf56Q9H5V9 222 aa23.96■■□□□ 1.43
TRIM54-201ENST00000296098 COL4A6Q14031 1691 aa23.95■■□□□ 1.43
TRIM54-201ENST00000296098 C2orf78A6NCI8 922 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 SOD2P04179 222 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 ATN1P54259 1190 aaPredicted RBP23.95■■□□□ 1.42
TRIM54-201ENST00000296098 HERVK_113P63132 956 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 VEPH1Q14D04 833 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 BNC2Q6ZN30 1099 aaPredicted RBP23.95■■□□□ 1.42
TRIM54-201ENST00000296098 KBTBD2Q8IY47 623 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 LPCAT1Q8NF37 534 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 OR4K2Q8NGD2 314 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 EXT2Q93063 718 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 DEFB118Q96PH6 123 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 ERVK-6Q9BXR3 956 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 TRPC7Q9HCX4 862 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 MRGBPQ9NV56 204 aa23.95■■□□□ 1.42
TRIM54-201ENST00000296098 POLR3BQ9NW08 1133 aaPredicted RBP23.95■■□□□ 1.42
TRIM54-201ENST00000296098 UBA6A0AVT1 1052 aaPredicted RBP23.94■■□□□ 1.42
TRIM54-201ENST00000296098 PRLP01236 227 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 PRSS56P0CW18 603 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 INHBCP55103 352 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 C1QTNF8P60827 252 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 DSG1Q02413 1049 aa23.94■■□□□ 1.42
TRIM54-201ENST00000296098 CXorf57Q6NSI4 855 aaKnown RBP23.94■■□□□ 1.42
TRIM54-201ENST00000296098 RYBPQ8N488 228 aaPredicted RBP23.94■■□□□ 1.42
TRIM54-201ENST00000296098 WBP2Q969T9 261 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms