RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 FAM171BQ6P995 826 aa17.31■□□□□ 0.36
SHANK1-201ENST00000293441 TBC1D30Q9Y2I9 924 aa17.31■□□□□ 0.36
SHANK1-201ENST00000293441 VWA7Q9Y334 891 aa17.31■□□□□ 0.36
SHANK1-201ENST00000293441 SCN2BO60939 215 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 SPIBQ01892 262 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 PRKCZQ05513 592 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 TTMPQ5BVD1 217 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 FNBP1LQ5T0N5 605 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 KLHL35Q6PF15 583 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 CIR1Q86X95 450 aaPredicted RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 OR4K2Q8NGD2 314 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 DPEP3Q9H4B8 488 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 AFDNP55196 1824 aaKnown RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 C4BPAP04003 597 aaKnown RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 NAA20P61599 178 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 POTEHQ6S545 545 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 LCLAT1Q6UWP7 414 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 CLVS1Q8IUQ0 354 aaPredicted RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 PPCDCQ96CD2 204 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 SUCOQ9UBS9 1254 aaKnown RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 FFAR2O15552 330 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 LYPLA2O95372 231 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 CDC42P60953 191 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 TRAF3Q13114 568 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 TAF5Q15542 800 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 ZSWIM7Q19AV6 140 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 ZIK1Q3SY52 487 aaPredicted RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 TAPT1Q6NXT6 567 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 CHSY3Q70JA7 882 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 C8orf59Q8N0T1 100 aaPredicted RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 SMYD1Q8NB12 490 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 DCUN1D5Q9BTE7 237 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 ATG13O75143 517 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 TNFAIP8O95379 198 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 AUHQ13825 339 aaKnown RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 MAPK11Q15759 364 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 DENND6AQ8IWF6 608 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 GPR135Q8IZ08 494 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 ITCHQ96J02 903 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 CSPG4P5Q96PW8 444 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 OR52E6Q96RD3 313 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 MECRQ9BV79 373 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 FGFBP2Q9BYJ0 223 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 RFXANKO14593 260 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 AZIN1O14977 448 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 CILPO75339 1184 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 RPP40O75818 363 aaKnown RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 ACRP10323 421 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 MANFP55145 182 aaKnown RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 DGCR6Q14129 220 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 LSM12Q3MHD2 195 aaKnown RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 GPR180Q86V85 440 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 C17orf64Q86WR6 236 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 PHF10Q8WUB8 498 aaKnown RBP17.3■□□□□ 0.36
SHANK1-201ENST00000293441 HEXDCQ8WVB3 486 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 SPATA2Q9UM82 520 aa17.3■□□□□ 0.36
SHANK1-201ENST00000293441 AP3D1O14617 1153 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 MFSD11O43934 449 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.29■□□□□ 0.36
SHANK1-201ENST00000293441 DEF8Q6ZN54 512 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 CIDEBQ9UHD4 219 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 RAP2CQ9Y3L5 183 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 TSHRP16473 764 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ALOX12P18054 663 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 FNDC11Q9BVV2 318 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 PRRG4Q9BZD6 226 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 CLN6Q9NWW5 311 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 GALNT8Q9NY28 637 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 RWDD3Q9Y3V2 267 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ADGRB2O60241 1585 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 FAM237AA0A1B0GTK4 181 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 VIPP01282 170 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ADRA1BP35368 520 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 SSR2P43308 183 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ACMSDQ8TDX5 336 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ASZ1Q8WWH4 475 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ELL3Q9HB65 397 aaPredicted RBP17.29■□□□□ 0.36
SHANK1-201ENST00000293441 SPAG4Q9NPE6 437 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ALAS2P22557 587 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ITPKBP27987 946 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 RABGGTBP53611 331 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ZDHHC20Q5W0Z9 365 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 BEND7Q8N7W2 519 aaPredicted RBP17.29■□□□□ 0.36
SHANK1-201ENST00000293441 RDH11Q8TC12 318 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ROBO3Q96MS0 1386 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ATRNO75882 1429 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ABHD14A-ACY1A0A1B0GW23 586 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 CMC1Q7Z7K0 106 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 ZNF248Q8NDW4 579 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 PCDHB18PQ96TA0 734 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 MCMBPQ9BTE3 642 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 EQTNQ9NQ60 294 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 DAPK2Q9UIK4 370 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 PRKAB1Q9Y478 270 aa17.29■□□□□ 0.36
SHANK1-201ENST00000293441 LOC100506127A0A0U1RQW1 187 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 MCIDASD6RGH6 385 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 ABHD2P08910 425 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 CAPN13Q6MZZ7 669 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-201ENST00000293441 RAD51AP1Q96B01 352 aa17.28■□□□□ 0.36
SHANK1-201ENST00000293441 TIFAQ96CG3 184 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms