RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 OR9I1Q8NGQ6 314 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 OR4L1Q8NH43 312 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 BRSK1Q8TDC3 778 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 RMDN1Q96DB5 314 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 CYP2S1Q96SQ9 504 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 CATSPERZQ9NTU4 200 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 PTGDR2Q9Y5Y4 395 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 CASP8AP2Q9UKL3 1982 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 TBKBP1A7MCY6 615 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 H3BMM5 538 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 SCAMP3O14828 347 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 ACSL4O60488 711 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 GPC4O75487 556 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 ALDH1A1P00352 501 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 GALTP07902 379 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 ZDHHC11BP0C7U3 371 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 ATP5C1P36542 298 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 FASTKQ14296 549 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 OR4D1Q15615 310 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 MMEL1Q495T6 779 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 LHX8Q68G74 356 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 MRNIPQ6NTE8 343 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 CYHR1Q6ZMK1 362 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 GALNT7Q86SF2 657 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 PPP2R3CQ969Q6 453 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 C3orf30Q96M34 536 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 MRPL1Q9BYD6 325 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 GKN1Q9NS71 199 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 FAM50BQ9Y247 325 aa18.36■□□□□ 0.53
SHKBP1-201ENST00000291842 A0A0U1RQS6 177 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 TBC1D4O60343 1298 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 ME2P23368 584 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 SATB1Q01826 763 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 ACVR1Q04771 509 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 PTPRRQ15256 657 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 PFKFB4Q16877 469 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 LAYNQ6UX15 382 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 CHSY3Q70JA7 882 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 AFAP1L2Q8N4X5 818 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 PTGR2Q8N8N7 351 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 TTPALQ9BTX7 342 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 GIMAP2Q9UG22 337 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 DNMT3LQ9UJW3 386 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 CAPN8A6NHC0 703 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 PSMD12O00232 456 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 TSPAN3O60637 253 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 FMO4P31512 558 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 ALDH1A3P47895 512 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 CDKN1CP49918 316 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 SH3BP2P78314 561 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 PDAP1Q13442 181 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 PTK2BQ14289 1009 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 GSTA3Q16772 222 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 PQLC1Q8N2U9 271 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 STON2Q8WXE9 905 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 CDKN2AIPNLQ96HQ2 116 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 FAR2Q96K12 515 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 NSUN5Q96P11 429 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 NR1H4Q96RI1 486 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 ZBED2Q9BTP6 218 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 CINPQ9BW66 212 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 COPS7BQ9H9Q2 264 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 PSMD13Q9UNM6 376 aa18.35■□□□□ 0.53
SHKBP1-201ENST00000291842 ARVCFO00192 962 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 FBP2O00757 339 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 TXNDC9O14530 226 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 IRF1P10914 325 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 ZNF37AP17032 561 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 NME5P56597 212 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 GEN1Q17RS7 908 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 C16orf59Q7L2K0 433 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 FBXO22Q8NEZ5 403 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 OR4K2Q8NGD2 314 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 PRICKLE1Q96MT3 831 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 GCNAQ96QF7 691 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 TRIB3Q96RU7 358 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 SLC24A3Q9HC58 644 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 CBX4O00257 560 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 SMIM24O75264 130 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 SNUPNO95149 360 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 NDST3O95803 873 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 KLKB1P03952 638 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 STC1P52823 247 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 HERVK_113P63132 956 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 SLC43A3Q8NBI5 491 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 MDGA1Q8NFP4 955 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 KLHL32Q96NJ5 620 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 MGME1Q9BQP7 344 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 ERVK-6Q9BXR3 956 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 VCX3BQ9H321 246 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 UBA2Q9UBT2 640 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 VPS28Q9UK41 221 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 PCDHGC4Q9Y5F7 938 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 PCDHGA7Q9Y5G6 932 aa18.34■□□□□ 0.53
SHKBP1-201ENST00000291842 E7ENX8 843 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 H3BNC9 293 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 MYCP01106 439 aaPredicted RBP18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 EPOP01588 193 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 HSPA1AP0DMV8 641 aaKnown RBP18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 HSPA1BP0DMV9 641 aaKnown RBP18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms