RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 VIPR1P32241 457 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 SERPINB6P35237 376 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 PRKCIP41743 596 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 HCAR3P49019 387 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 LY6DQ14210 128 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 DPYSL2Q16555 572 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 CERCAMQ5T4B2 595 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 PHF19Q5T6S3 580 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 RAET1GQ6H3X3 334 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 PNCKQ6P2M8 343 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 INO80CQ6PI98 192 aaPredicted RBP12.78□□□□□ -0.36
CD44-203ENST00000278386 SPRED1Q7Z699 444 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 HEATR4Q86WZ0 1026 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 SFTPA2Q8IWL1 248 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 PELI3Q8N2H9 469 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 CCL4L1Q8NHW4 92 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 NSMCE3Q96MG7 304 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 NUDCD1Q96RS6 583 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 BPIFA3Q9BQP9 254 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 ETNK2Q9NVF9 386 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 AIPL1Q9NZN9 384 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 TMEM63CQ9P1W3 806 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 LRIT1Q9P2V4 623 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 APPL1Q9UKG1 709 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 PCDHGC4Q9Y5F7 938 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 RNF215Q9Y6U7 377 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 A0A1W2PQ67 120 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 A0A1W2PQC6 194 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 SERPINC1P01008 464 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 HOXC4P09017 264 aaPredicted RBP12.77□□□□□ -0.37
CD44-203ENST00000278386 TCF4P15884 667 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 AMPD1P23109 780 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 PCK1P35558 622 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 TRIM23P36406 574 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 ETV3P41162 512 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 GNPDA1P46926 289 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 MAPK10P53779 464 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 MAZP56270 477 aaKnown RBP12.77□□□□□ -0.37
CD44-203ENST00000278386 MAXP61244 160 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 ILF3Q12906 894 aaKnown RBP eCLIP12.77□□□□□ -0.37
CD44-203ENST00000278386 TRAF2Q12933 501 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 BIRC2Q13490 618 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 HLTFQ14527 1009 aaKnown RBP eCLIP12.77□□□□□ -0.37
CD44-203ENST00000278386 KRT81Q14533 505 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 USP45Q70EL2 814 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 TTC9Q92623 222 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 WBP1Q96G27 269 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 COQ10AQ96MF6 247 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 CSPG4P5Q96PW8 444 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 CCNL2Q96S94 520 aaPredicted RBP12.77□□□□□ -0.37
CD44-203ENST00000278386 GSDMCQ9BYG8 508 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 SEMA4CQ9C0C4 833 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 ZMYND15Q9H091 742 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 NOD2Q9HC29 1040 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 PCDHGA7Q9Y5G6 932 aa12.77□□□□□ -0.37
CD44-203ENST00000278386 A0A1B0GTH6 734 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 HTRA2O43464 458 aaPredicted RBP12.76□□□□□ -0.37
CD44-203ENST00000278386 HEXIM1O94992 359 aaKnown RBP12.76□□□□□ -0.37
CD44-203ENST00000278386 CCNB1P14635 433 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 PNLIPP16233 465 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 ITIH1P19827 911 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 GJC1P36383 396 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 SSR1P43307 286 aaKnown RBP12.76□□□□□ -0.37
CD44-203ENST00000278386 MMP13P45452 471 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 CDH6P55285 790 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 AMZ1Q400G9 498 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 BOLA3Q53S33 107 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 ARMC12Q5T9G4 340 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 DOK6Q6PKX4 331 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 POLNQ7Z5Q5 900 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 PGBD5Q8N414 524 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 ZDHHC1Q8WTX9 485 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 SNRNP27Q8WVK2 155 aaKnown RBP12.76□□□□□ -0.37
CD44-203ENST00000278386 DTD2Q96FN9 168 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 BTBD6Q96KE9 485 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 NAP1L5Q96NT1 182 aaPredicted RBP12.76□□□□□ -0.37
CD44-203ENST00000278386 MGME1Q9BQP7 344 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 NT5MQ9NPB1 228 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 KCTD5Q9NXV2 234 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 ANAPC7Q9UJX3 599 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 PHTF1Q9UMS5 762 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 AHCTF1Q8WYP5 2266 aa12.76□□□□□ -0.37
CD44-203ENST00000278386 NPIPB15A6NHN6 443 aaPredicted RBP12.75□□□□□ -0.37
CD44-203ENST00000278386 RHPN2P1A8MT19 583 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 PSMD11O00231 422 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 NUDT21O43809 227 aaKnown RBP12.75□□□□□ -0.37
CD44-203ENST00000278386 MAFKO60675 156 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 RARAP10276 462 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 LIPCP11150 499 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 CTPS1P17812 591 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 CR2P20023 1033 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 LHCGRP22888 699 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 AK4P27144 223 aaPredicted RBP12.75□□□□□ -0.37
CD44-203ENST00000278386 ZNF165P49910 485 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 CDK3Q00526 305 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 ITKQ08881 620 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 PIGHQ14442 188 aaPredicted RBP12.75□□□□□ -0.37
CD44-203ENST00000278386 MARC1Q5VT66 337 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 CAVIN1Q6NZI2 390 aaKnown RBP12.75□□□□□ -0.37
CD44-203ENST00000278386 OGFOD3Q6PK18 319 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms