RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 DMTF1Q9Y222 760 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 BTRCQ9Y297 605 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 TRAF6Q9Y4K3 522 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 LAMA3Q16787 3333 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 A0A0J9YVX5 310 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 TRMUO75648 421 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 INHAP05111 366 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 ASGR1P07306 291 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 ALDOCP09972 364 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 VARSP26640 1264 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 GRK4P32298 578 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 HOXD12P35452 270 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 STT3AP46977 705 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 CRYBB1P53674 252 aaPredicted RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 MAPK10P53779 464 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 CDKN2DP55273 166 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 FOXA1P55317 472 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 ECT2LQ008S8 904 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 RHDQ02161 417 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 STX5Q13190 355 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 HERC3Q15034 1050 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 MAP7D1Q3KQU3 841 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 TIGD5Q53EQ6 642 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 C6orf10Q5SRN2 563 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 CHSY3Q70JA7 882 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 MAELQ96JY0 434 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 NSUN5Q96P11 429 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 VAT1Q99536 393 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 BEGAINQ9BUH8 593 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 SLC2A11Q9BYW1 496 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 HMX1Q9NP08 348 aaPredicted RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 SPAG4Q9NPE6 437 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 CROTQ9UKG9 612 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 NRP2O60462 931 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 NPHS1O60500 1241 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 SRP72O76094 671 aaKnown RBP10.07□□□□□ -0.8
LIG3-201ENST00000262327 OR4Q2P0C623 313 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 PRSS56P0CW18 603 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 HADHAP40939 763 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 CD86P42081 329 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 HCAR3P49019 387 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 NR1H2P55055 460 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 HPCAP84074 193 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 DCLRE1AQ6PJP8 1040 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 SCIMPQ6UWF3 145 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 ZNF554Q86TJ5 538 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 FUNDC1Q8IVP5 155 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 ZNF786Q8N393 782 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 C2CD4AQ8NCU7 369 aaPredicted RBP10.07□□□□□ -0.8
LIG3-201ENST00000262327 CASP10Q92851 521 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 PPP1R10Q96QC0 940 aaKnown RBP10.07□□□□□ -0.8
LIG3-201ENST00000262327 EPB41L1Q9H4G0 881 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 OLAHQ9NV23 265 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 NSMCE4AQ9NXX6 385 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 SCN10AQ9Y5Y9 1956 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 A0A1B0GTL3 188 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 MOXD2PA6NHM9 499 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 J3KR12 359 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 TRIM24O15164 1050 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 HTRA2O43464 458 aaPredicted RBP10.07□□□□□ -0.8
LIG3-201ENST00000262327 ANXA9O76027 345 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 CASP2P42575 452 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 DSC2Q02487 901 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 GRB7Q14451 532 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 IHHQ14623 411 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 HECTD2Q5U5R9 776 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 PM20D1Q6GTS8 502 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 LPCAT2Q7L5N7 544 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 LRRTM3Q86VH5 581 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 DHFR2Q86XF0 187 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 DDIASQ8IXT1 998 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 HDAC10Q969S8 669 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 HSPBAP1Q96EW2 488 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 FCRL5Q96RD9 977 aa10.07□□□□□ -0.8
LIG3-201ENST00000262327 LSM1O15116 133 aaKnown RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 B3GAT3O94766 335 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 LTA4HP09960 611 aaKnown RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 MTHFD1P11586 935 aaKnown RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 COL6A2P12110 1019 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 PRKAA2P54646 552 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 RPL26P61254 145 aaKnown RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 PRKCQQ04759 706 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 SQLEQ14534 574 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 RFTN1Q14699 578 aaPredicted RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 RAB41Q5JT25 222 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 CHST15Q7LFX5 561 aaPredicted RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 NANOGNBQ7Z5D8 188 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 OFCC1Q8IZS5 231 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 CBR4Q8N4T8 237 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 SMARCD1Q96GM5 515 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 AKTIPQ9H8T0 292 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 TREX1Q9NSU2 369 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 NEU3Q9UQ49 428 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 TMEM247A6NEH6 219 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 F9P00740 461 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 NCK1P16333 377 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 CCNCP24863 283 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 ADRA1AP35348 466 aa10.06□□□□□ -0.8
LIG3-201ENST00000262327 FRG1Q14331 258 aaKnown RBP10.06□□□□□ -0.8
LIG3-201ENST00000262327 FUT11Q495W5 492 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms