RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 HIPK1Q86Z02 1210 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 CLEC10AQ8IUN9 316 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 EPS8L3Q8TE67 593 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 HIC2Q96JB3 615 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 DNAJC1Q96KC8 554 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 PIGUQ9H490 435 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 POMKQ9H5K3 350 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 PDZD7Q9H5P4 517 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 RRAGCQ9HB90 399 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 TIMMDC1Q9NPL8 285 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 HPS4Q9NQG7 708 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 INVSQ9Y283 1065 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 MYL12BO14950 172 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 DNAJB5O75953 348 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 C7P10643 843 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 UROSP10746 265 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 PTPN2P17706 415 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ADCYAP1R1P41586 468 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 IRF8Q02556 426 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 RING1Q06587 406 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 PPP3CAQ08209 521 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 PAMR1Q6UXH9 720 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 C17orf64Q86WR6 236 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ARHGEF19Q8IW93 802 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 SFRP1Q8N474 314 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 RTL3Q8N8U3 475 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ATG16L2Q8NAA4 619 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 HAVCR2Q8TDQ0 301 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 PNKPQ96T60 521 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ZSCAN5AQ9BUG6 496 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 WDR12Q9GZL7 423 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 RNPEPQ9H4A4 650 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 NXF3Q9H4D5 531 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 C14orf105Q9NVL8 296 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 DUSP12Q9UNI6 340 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ST14Q9Y5Y6 855 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ZFP37Q9Y6Q3 630 aaPredicted RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 STRCQ7RTU9 1775 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 AZIN1O14977 448 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 TMCC2O75069 709 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 CD63P08962 238 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ALOX5P09917 674 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 MGAT1P26572 445 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 GPR1P46091 355 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 KLK7P49862 253 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 TBCELQ5QJ74 424 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 CACTIN-AS1Q8N1I8 211 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 PELOQ9BRX2 385 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 RNPEPL1Q9HAU8 725 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 SNX13Q9Y5W8 968 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 TLL2Q9Y6L7 1015 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 TEX28O15482 410 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 DNTTP04053 509 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ITGA2BP08514 1039 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 CTNNB1P35222 781 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 GHRHRQ02643 423 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 TMEM62Q0P6H9 643 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 STX4Q12846 297 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 PRKD1Q15139 912 aaPredicted RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 INAQ16352 499 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 EIF3MQ7L2H7 374 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ANKS1BQ7Z6G8 1248 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ENKURQ8TC29 256 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 DEPDC7Q96QD5 511 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 USP29Q9HBJ7 922 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 SUCOQ9UBS9 1254 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 VWA7Q9Y334 891 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 PLLPQ9Y342 182 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 AKAP11Q9UKA4 1901 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 BTN3A1O00481 513 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ITGA10O75578 1167 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 PRKAR2AP13861 404 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 CMPK1P30085 196 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 LRPAP1P30533 357 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 GRIA4P48058 902 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 AP3S2P59780 193 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 CACNB2Q08289 660 aaPredicted RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 VAC14Q08AM6 782 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 LCN1P1Q5VSP4 162 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 ZYG11AQ6WRX3 759 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 CYS1Q717R9 158 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 MARK2Q7KZI7 788 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 SYT12Q8IV01 421 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 SCUBE3Q8IX30 993 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 FAR1Q8WVX9 515 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 MCRS1Q96EZ8 462 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 C1orf74Q96LT6 269 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 RBM4BQ9BQ04 359 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 RBM4Q9BWF3 364 aaKnown RBP4.32□□□□□ -1.72
VPS13C-202ENST00000261517 DEC1Q9P2X7 70 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 CDK5RAP2Q96SN8 1893 aa4.32□□□□□ -1.72
VPS13C-202ENST00000261517 CLDN4O14493 209 aa4.31□□□□□ -1.72
VPS13C-202ENST00000261517 SEC22BO75396 215 aa4.31□□□□□ -1.72
VPS13C-202ENST00000261517 MLH1P40692 756 aa4.31□□□□□ -1.72
VPS13C-202ENST00000261517 CASP5P51878 434 aa4.31□□□□□ -1.72
VPS13C-202ENST00000261517 C21orf59P57076 290 aa4.31□□□□□ -1.72
VPS13C-202ENST00000261517 SMU1Q2TAY7 513 aa4.31□□□□□ -1.72
VPS13C-202ENST00000261517 FAM153CQ494X1 144 aa4.31□□□□□ -1.72
VPS13C-202ENST00000261517 GLRA4Q5JXX5 417 aa4.31□□□□□ -1.72
VPS13C-202ENST00000261517 PCDH20Q8N6Y1 951 aaKnown RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms