RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 SCUBE3Q8IX30 993 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 FAM13CQ8NE31 585 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 THRSPQ92748 146 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 CCDC3Q9BQI4 270 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 TKTL2Q9H0I9 626 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 EBF2Q9HAK2 575 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 IL1RAPQ9NPH3 570 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 GIN1Q9NXP7 522 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 ZNF221Q9UK13 617 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 SPATA2Q9UM82 520 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 GIT1Q9Y2X7 761 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 SNX8Q9Y5X2 465 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 TRIM43BA6NCK2 446 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 ENTPD5O75356 428 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 MTRF1O75570 445 aaKnown RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 PTPN1P18031 435 aaKnown RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 TYMPP19971 482 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 PROZP22891 400 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 FUT2Q10981 343 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 FOXR1Q6PIV2 292 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 CRTC3Q6UUV7 619 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 RAB43Q86YS6 212 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 PEX5LQ8IYB4 626 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 CARNMT1Q8N4J0 409 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 PJA1Q8NG27 643 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 C2orf15Q8WU43 125 aaKnown RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 EEF1AKMT1Q8WVE0 214 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 ACSF2Q96CM8 615 aaPredicted RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 ZCWPW1Q9H0M4 648 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 PCDHGB1Q9Y5G3 927 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 AQP12BA6NM10 295 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 KRT36O76013 467 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 CPSF4O95639 269 aaKnown RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 TIE1P35590 1138 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 SCNN1BP51168 640 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 CDH4P55283 916 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 PPP3CAQ08209 521 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 UBAP2LQ14157 1087 aaKnown RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 RNASEH2BQ5TBB1 312 aaKnown RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 PAMR1Q6UXH9 720 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 AQP12AQ8IXF9 295 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 BEND7Q8N7W2 519 aaPredicted RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 OR4L1Q8NH43 312 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 PSMA8Q8TAA3 256 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 ASB9Q96DX5 294 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 POLR1BQ9H9Y6 1135 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 POLD4Q9HCU8 107 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 PAK6Q9NQU5 681 aaPredicted RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 INTS7Q9NVH2 962 aaKnown RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 TEX28O15482 410 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 DYNC1LI2O43237 492 aaPredicted RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 SSNA1O43805 119 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 NFICP08651 508 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 CCNCP24863 283 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 SLC7A1P30825 629 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 POLR2JP52435 117 aaKnown RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 LCP2Q13094 533 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 ADGRE1Q14246 886 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 GK3PQ14409 553 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 SKIV2LQ15477 1246 aaKnown RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 IL17AQ16552 155 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 HKDC1Q2TB90 917 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 SETMARQ53H47 684 aaPredicted RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 ALDH16A1Q8IZ83 802 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 POU5F2Q8N7G0 328 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 ANKRD49Q8WVL7 239 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 CPB2Q96IY4 423 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 DCUN1D5Q9BTE7 237 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 KIFC1Q9BW19 673 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 NOL6Q9H6R4 1146 aaKnown RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 ALG9Q9H6U8 611 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 TAS2R1Q9NYW7 299 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 CLIC5Q9NZA1 410 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 DOLKQ9UPQ8 538 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 COL2A1P02458 1487 aaPredicted RBP4.42□□□□□ -1.7
CHD9-201ENST00000219084 PTPRJQ12913 1337 aa4.42□□□□□ -1.7
CHD9-201ENST00000219084 SLC12A8A0AV02 714 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 E2F8A0AVK6 867 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 CLDN25C9JDP6 229 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 F8VP50 259 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 EML1O00423 815 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 SMNDC1O75940 238 aaKnown RBP eCLIP4.41□□□□□ -1.7
CHD9-201ENST00000219084 SEMA3DO95025 777 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 HIST1H2ABP04908 130 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 GSTT2BP0CG30 244 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 INSRRP14616 1297 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 GRIA2P42262 883 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 LIMK2P53671 638 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 MRPS5P82675 430 aaKnown RBP4.41□□□□□ -1.7
CHD9-201ENST00000219084 RFTN1Q14699 578 aaPredicted RBP4.41□□□□□ -1.7
CHD9-201ENST00000219084 ZNF621Q6ZSS3 439 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 HIST3H2AQ7L7L0 130 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 C10orf107Q8IVU9 208 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 SYTL1Q8IYJ3 562 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 BANPQ8N9N5 519 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 SELENOMQ8WWX9 145 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 CLP1Q92989 425 aaKnown RBP4.41□□□□□ -1.7
CHD9-201ENST00000219084 HIST1H2ACQ93077 130 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 CRELD1Q96HD1 420 aa4.41□□□□□ -1.7
CHD9-201ENST00000219084 APOL2Q9BQE5 337 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms