RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CSADQ9Y600 493 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 hCG_1818297A0A087WSY0 165 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TMEM221A6NGB7 291 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TLL1O43897 1013 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PLIN3O60664 434 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CDK4P11802 303 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PTPN2P17706 415 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 MYF6P23409 242 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L2Q6R6M4 530 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 IDO2Q6ZQW0 420 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 KDELC2Q7Z4H8 507 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ALYREFQ86V81 257 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PHC2Q8IXK0 858 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SLC47A1Q96FL8 570 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 QRFPRQ96P65 431 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 THUMPD1Q9NXG2 353 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PRKAB2O43741 272 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SP4Q02446 784 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 DAG1Q14118 895 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 GRM2Q14416 872 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 UBE2SQ16763 222 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PROSER3Q2NL68 480 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 GAB3Q8WWW8 586 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 C7orf50Q9BRJ6 194 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ROGDIQ9GZN7 287 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CHST7Q9NS84 486 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 NCKAP1Q9Y2A7 1128 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CSPG5O95196 566 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 RAB10P61026 200 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PLIN5Q00G26 463 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SREBF2Q12772 1141 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 UBAP2LQ14157 1087 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 QRICH1Q2TAL8 776 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TBRG1Q3YBR2 411 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 AGAP7PQ5VUJ5 663 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ADAMTSL2Q86TH1 951 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SCML4Q8N228 414 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF671Q8TAW3 534 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SNTG2Q9NY99 539 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 WWOXQ9NZC7 414 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TJP2Q9UDY2 1190 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 NOD1Q9Y239 953 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PCDHGB3Q9Y5G1 929 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 FGF10O15520 208 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PMPCBO75439 489 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 INMTO95050 263 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 FTH1P02794 183 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 HOXC6P09630 235 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PCSK1P29120 753 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 GYG1P46976 350 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PPATQ06203 517 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 FGL1Q08830 312 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 BMPR2Q13873 1038 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TEAD4Q15561 434 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 IRAK1BP1Q5VVH5 260 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF470Q6ECI4 717 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ADNP2Q6IQ32 1131 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 HAGHLQ6PII5 290 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TIFABQ6ZNK6 161 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 OR8K5Q8NH50 307 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 DNAJB3Q8WWF6 145 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 USP29Q9HBJ7 922 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TAS2R9Q9NYW1 312 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 MEGF6O75095 1541 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ATP6AP2A0A1C7CYW4 349 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SIGLEC16A6NMB1 481 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L5A8MUK1 530 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 YKT6O15498 198 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RP2O75695 350 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 BCAT1P54687 386 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 TAS2R43P59537 309 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 TTLL12Q14166 644 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ASTE1Q2TB18 679 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 WDR72Q3MJ13 1102 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 CYS1Q717R9 158 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ASB15Q8WXK1 588 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 MARK4Q96L34 752 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 GLT1D1Q96MS3 346 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RAVER2Q9HCJ3 691 aaKnown RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SULT1C2O00338 296 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 QSOX1O00391 747 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ACOX3O15254 700 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 KLRC4O43908 158 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PLOD3O60568 738 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 BMP2P12643 396 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 LIMK2P53671 638 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 KIZQ2M2Z5 673 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SYVN1Q86TM6 617 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF431Q8TF32 576 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 GPRASP2Q96D09 838 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 NGLY1Q96IV0 654 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 LRRC3Q9BY71 257 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ZMAT5Q9UDW3 170 aaKnown RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 DNPEPQ9ULA0 475 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 OTCP00480 354 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 HMGCRP04035 888 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 MBL2P11226 248 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ALAS1P13196 640 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 CD79BP40259 229 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms