RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MARCOQ9UEW3 520 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MYRFQ9Y2G1 1151 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ABCA9Q8IUA7 1624 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KIAA0232Q92628 1395 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ITSN1Q15811 1721 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SRRM3A6NNA2 597 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SULT1B1O43704 296 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FAM20BO75063 409 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 LTFP02788 710 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CFIP05156 583 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PRG2P13727 222 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ARCN1P48444 511 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MYBPC1Q00872 1141 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF846Q147U1 533 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SEC23BQ15437 767 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC24Q50LG9 513 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ADGRF1Q5T601 910 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 IRGCQ6NXR0 463 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 C19orf35Q6ZS72 473 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF571Q7Z3V5 609 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FBXO33Q7Z6M2 555 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SLC13A5Q86YT5 568 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 DAW1Q8N136 415 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SLC44A5Q8NCS7 719 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RHPN1Q8TCX5 695 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PNKPQ96T60 521 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CALN1Q9BXU9 219 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PECRQ9BY49 303 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 C17orf75Q9HAS0 396 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MOV10Q9HCE1 1003 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TRNAU1APQ9NX07 287 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CPNE7Q9UBL6 633 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GABBR1Q9UBS5 961 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 DLGAP4Q9Y2H0 992 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SNX14Q9Y5W7 946 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KLRC4-KLRK1H3BQV0 150 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZBTB5O15062 677 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MDM4O15151 490 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FARP2O94887 1054 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 IGSF6O95976 241 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MT-CO2P00403 227 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 OC90Q02509 493 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SCRN1Q12765 414 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AGBL2Q5U5Z8 902 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 LYPLAL1Q5VWZ2 237 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FAM35AQ86V20 835 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 DSELQ8IZU8 1212 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SNX31Q8N9S9 440 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FAM174AQ8TBP5 190 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SLC25A23Q9BV35 468 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CHST12Q9NRB3 414 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TMCO1Q9UM00 188 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CHKBQ9Y259 395 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GIMAP1-GIMAP5A0A087WTJ2 511 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TRAV19A0A0A6YYK7 116 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MEN1O00255 615 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KCNQ3O43525 872 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MPZL2O60487 215 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF217O75362 1048 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FARS2O95363 451 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 HLA-DQA2P01906 255 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GLB1P16278 677 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FAUP35544 74 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MDH1P40925 334 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ALDH3A2P51648 485 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TPI1P60174 286 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GFPT1Q06210 699 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ADGRE1Q14246 886 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RALGPS1Q5JS13 557 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AGAP9Q5VTM2 703 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 UGT2A3Q6UWM9 527 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KCNK18Q7Z418 384 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 THAP5Q7Z6K1 395 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RAB43Q86YS6 212 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PPM1NQ8N819 430 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PUM2Q8TB72 1066 aaKnown RBP eCLIP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 NDNFQ8TB73 568 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 WDCPQ9H6R7 721 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AFF4Q9UHB7 1163 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TRPS1Q9UHF7 1281 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 NUDT5Q9UKK9 219 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GSTK1Q9Y2Q3 226 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AP3M1Q9Y2T2 418 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RPAP1Q9BWH6 1393 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KLRF2D3W0D1 207 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KLF4O43474 513 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KRT34O76011 436 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CER1O95813 267 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FTCDO95954 541 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 C1RP00736 705 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 VIPP01282 170 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TXNP10599 105 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 EIF2AK2P19525 551 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CHN2P52757 468 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ST3GAL1Q11201 340 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AADACL4Q5VUY2 407 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FAM91A1Q658Y4 838 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KIAA1324Q6UXG2 1013 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MMAAQ8IVH4 418 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 OR5T3Q8NGG3 340 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms