RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 CCKBRP32239 447 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 ARL4AP40617 200 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 VAC14Q08AM6 782 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 LBRQ14739 615 aaKnown RBP18.49■□□□□ 0.55
CLN3-241ENST00000635861 DPYSL2Q16555 572 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 BOLA3Q53S33 107 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 RALGPS1Q5JS13 557 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 OGFOD3Q6PK18 319 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 ZNF571Q7Z3V5 609 aaPredicted RBP18.49■□□□□ 0.55
CLN3-241ENST00000635861 RD3Q7Z3Z2 195 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 BBS5Q8N3I7 341 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 NPWQ8N729 165 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 FUBP1Q96AE4 644 aaKnown RBP18.49■□□□□ 0.55
CLN3-241ENST00000635861 CCDC74AQ96AQ1 378 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 PDXPQ96GD0 296 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 TMEM74Q96NL1 305 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 CWC15Q9P013 229 aaKnown RBP18.49■□□□□ 0.55
CLN3-241ENST00000635861 TMEM63CQ9P1W3 806 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 APPL1Q9UKG1 709 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 PCDHGA7Q9Y5G6 932 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 GLB1P16278 677 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 SCNN1BP51168 640 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 KLHL30Q0D2K2 578 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 ANO6Q4KMQ2 910 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 FIGNQ5HY92 759 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 PLA2G15Q8NCC3 412 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 TMEM159Q96B96 161 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 ZNF653Q96CK0 615 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 ISCUQ9H1K1 167 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 SYNDIG1Q9H7V2 258 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 SIRPGQ9P1W8 387 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 ACSL6Q9UKU0 697 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 A0A1B0GTH6 734 aa18.48■□□□□ 0.55
CLN3-241ENST00000635861 DDX3XO00571 662 aaKnown RBP eCLIP18.48■□□□□ 0.553e-8■■■□□ 15.1
CLN3-241ENST00000635861 PLD2O14939 933 aa18.48■□□□□ 0.55
CLN3-241ENST00000635861 HTRA2O43464 458 aaPredicted RBP18.48■□□□□ 0.55
CLN3-241ENST00000635861 TNFSF15O95150 251 aa18.48■□□□□ 0.55
CLN3-241ENST00000635861 ZNF235Q14590 738 aa18.48■□□□□ 0.55
CLN3-241ENST00000635861 ARHGAP40Q5TG30 622 aa18.48■□□□□ 0.55
CLN3-241ENST00000635861 CAVIN1Q6NZI2 390 aaKnown RBP18.48■□□□□ 0.55
CLN3-241ENST00000635861 PNCKQ6P2M8 343 aa18.48■□□□□ 0.55
CLN3-241ENST00000635861 LRRN3Q9H3W5 708 aa18.48■□□□□ 0.55
CLN3-241ENST00000635861 WDR26Q9H7D7 661 aa18.48■□□□□ 0.55
CLN3-241ENST00000635861 CPNE5Q9HCH3 593 aa18.48■□□□□ 0.55
CLN3-241ENST00000635861 PIEZO2Q9H5I5 2752 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 TMEM202A6NGA9 273 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 PSMD11O00231 422 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 PRB1P04280 392 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 PRKCGP05129 697 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 RPLP0P05388 317 aaKnown RBP18.47■□□□□ 0.55
CLN3-241ENST00000635861 CR2P20023 1033 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 SERPINB6P35237 376 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 INHBCP55103 352 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 CFHR1Q03591 330 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 SLC10A7Q0GE19 358 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 TAF1BQ53T94 588 aaPredicted RBP18.47■□□□□ 0.55
CLN3-241ENST00000635861 CERCAMQ5T4B2 595 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 PCSK4Q6UW60 755 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 TMCO3Q6UWJ1 677 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 ARHGAP36Q6ZRI8 547 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 RAB11FIP2Q7L804 512 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 TAF8Q7Z7C8 310 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 OR1E3Q8WZA6 343 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 NUDCD1Q96RS6 583 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 FGF22Q9HCT0 170 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 RABGEF1Q9UJ41 708 aa18.47■□□□□ 0.55
CLN3-241ENST00000635861 BZW2Q9Y6E2 419 aaKnown RBP18.47■□□□□ 0.55
CLN3-241ENST00000635861 A0A1W2PQM1 296 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 GOLGA6L3A6NEY3 463 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 K7ENP7 123 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 NUDT21O43809 227 aaKnown RBP18.46■□□□□ 0.55
CLN3-241ENST00000635861 CYP2A6P11509 494 aaPredicted RBP18.46■□□□□ 0.55
CLN3-241ENST00000635861 MYCLP1P12525 358 aaPredicted RBP18.46■□□□□ 0.55
CLN3-241ENST00000635861 GM2AP17900 193 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 TEAD1P28347 426 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 CDH6P55285 790 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 CCL7P80098 99 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 PEX6Q13608 980 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 PIGHQ14442 188 aaPredicted RBP18.46■□□□□ 0.55
CLN3-241ENST00000635861 ACOX1Q15067 660 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 C14orf28Q4W4Y0 310 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 INO80CQ6PI98 192 aaPredicted RBP18.46■□□□□ 0.55
CLN3-241ENST00000635861 FOXR1Q6PIV2 292 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 POLNQ7Z5Q5 900 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 LRRC49Q8IUZ0 686 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 ZNF843Q8N446 348 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 FBXO39Q8N4B4 442 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 KIAA1524Q8TCG1 905 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 NSMCE1Q8WV22 266 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 TEKT4Q8WW24 435 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 NUS1Q96E22 293 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 COQ10AQ96MF6 247 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 MGME1Q9BQP7 344 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 TRIM7Q9C029 511 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 EPB41L5Q9HCM4 733 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 PHPT1Q9NRX4 125 aaPredicted RBP18.46■□□□□ 0.55
CLN3-241ENST00000635861 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.46■□□□□ 0.55
CLN3-241ENST00000635861 B4GALT6Q9UBX8 382 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 PHTF1Q9UMS5 762 aa18.46■□□□□ 0.55
CLN3-241ENST00000635861 ZW10O43264 779 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms