RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PCDHGA12O60330 932 aa20.77■□□□□ 0.92
CLN3-240ENST00000631023 CD59P13987 128 aa20.77■□□□□ 0.92
CLN3-240ENST00000631023 CTPS1P17812 591 aa20.77■□□□□ 0.92
CLN3-240ENST00000631023 CSRP1P21291 193 aaKnown RBP20.77■□□□□ 0.92
CLN3-240ENST00000631023 ACOX1Q15067 660 aa20.77■□□□□ 0.92
CLN3-240ENST00000631023 DARS2Q6PI48 645 aaKnown RBP20.77■□□□□ 0.92
CLN3-240ENST00000631023 TP53I13Q8NBR0 393 aaPredicted RBP20.77■□□□□ 0.92
CLN3-240ENST00000631023 DNAH14Q0VDD8 3507 aa20.77■□□□□ 0.92
CLN3-240ENST00000631023 GOLGA4Q13439 2230 aaKnown RBP20.77■□□□□ 0.92
CLN3-240ENST00000631023 A0A0J9YYE9 177 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 RECQL5O94762 991 aaPredicted RBP20.76■□□□□ 0.91
CLN3-240ENST00000631023 STK10O94804 968 aaKnown RBP20.76■□□□□ 0.91
CLN3-240ENST00000631023 HEXIM1O94992 359 aaKnown RBP20.76■□□□□ 0.91
CLN3-240ENST00000631023 TRBC1P01850 177 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 RBL1P28749 1068 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 RXRGP48443 463 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 THOP1P52888 689 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 YPEL5P62699 121 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 PTK2BQ14289 1009 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 PRAMEF14Q5SWL7 426 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 LPCAT1Q8NF37 534 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 NPIPB15A6NHN6 443 aaPredicted RBP20.76■□□□□ 0.91
CLN3-240ENST00000631023 ANKRD66B4E2M5 251 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 PSMD11O00231 422 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 PRLP01236 227 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 HNF1BP35680 557 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 IGFALSP35858 605 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 IRF4Q15306 451 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 CNGA3Q16281 694 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 WSCD2Q2TBF2 565 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 CCDC70Q6NSX1 233 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 ZNF567Q8N184 647 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 SETD7Q8WTS6 366 aaKnown RBP20.76■□□□□ 0.91
CLN3-240ENST00000631023 IFT43Q96FT9 208 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 CARD9Q9H257 536 aa20.76■□□□□ 0.91
CLN3-240ENST00000631023 MBNL1Q9NR56 388 aaKnown RBP20.76■□□□□ 0.91
CLN3-240ENST00000631023 FLRT2O43155 660 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 ALPIP09923 528 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 CEACAM1P13688 526 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 ZNF30P17039 623 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 TNNT3P45378 269 aaPredicted RBP20.75■□□□□ 0.91
CLN3-240ENST00000631023 PFN3P60673 137 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 CDK18Q07002 472 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 KLF1Q13351 362 aaPredicted RBP20.75■□□□□ 0.91
CLN3-240ENST00000631023 PDE1CQ14123 709 aaPredicted RBP20.75■□□□□ 0.91
CLN3-240ENST00000631023 INAVAQ3KP66 663 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 DENND2CQ68D51 928 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 ITPRIPL1Q6GPH6 555 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 DBX2Q6ZNG2 339 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 ERMP1Q7Z2K6 904 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 PIP4P1Q86T03 277 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 NAXDQ8IW45 347 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 TADA1Q96BN2 335 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 FAM118BQ9BPY3 351 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 MLPHQ9BV36 600 aaPredicted RBP20.75■□□□□ 0.91
CLN3-240ENST00000631023 GPR27Q9NS67 375 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 FAM153AQ9UHL3 310 aa20.75■□□□□ 0.91
CLN3-240ENST00000631023 SPTY2D1-AS1A0A0U1RR47 76 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 CAPN8A6NHC0 703 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 KCNN4O15554 427 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 SH3BP5O60239 455 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 KCNK5O95279 499 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 MT-CYBP00156 380 aaPredicted RBP20.74■□□□□ 0.91
CLN3-240ENST00000631023 NFKB1P19838 968 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 CD68P34810 354 aaPredicted RBP20.74■□□□□ 0.91
CLN3-240ENST00000631023 NOVA1P51513 510 aaKnown RBP20.74■□□□□ 0.91
CLN3-240ENST00000631023 PPM1JQ5JR12 505 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 FAM182AQ5T1J6 154 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 SLC22A18ASQ8N1D0 253 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 CBARPQ8N350 705 aaPredicted RBP20.74■□□□□ 0.91
CLN3-240ENST00000631023 DEFB124Q8NES8 71 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 SPATA22Q8NHS9 363 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 COQ10AQ96MF6 247 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 FCRL5Q96RD9 977 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 KCNF1Q9H3M0 494 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 C10orf88Q9H8K7 445 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 RSPH14Q9UHP6 348 aa20.74■□□□□ 0.91
CLN3-240ENST00000631023 PMPCBO75439 489 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 ITGAVP06756 1048 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 KCNA4P22459 653 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 LHCGRP22888 699 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 IL9RQ01113 521 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 MTM1Q13496 603 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 INPP5AQ14642 412 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 PCSK7Q16549 785 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 QPCTQ16769 361 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 LRRC66Q68CR7 880 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 CRTC1Q6UUV9 634 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 KDELC2Q7Z4H8 507 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 PARGQ86W56 976 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 LYSMD1Q96S90 227 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 CACNA1AO00555 2505 aa20.73■□□□□ 0.91
CLN3-240ENST00000631023 GOLGA8CPA6NN73 597 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 PCCBP05166 539 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 GRK6P43250 576 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 PTPRRQ15256 657 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 SHBQ15464 509 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 PSAPL1Q6NUJ1 521 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 TSPAN33Q86UF1 283 aa20.72■□□□□ 0.91
CLN3-240ENST00000631023 SLC13A5Q86YT5 568 aaPredicted RBP20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms