RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 PCP4L1A6NKN8 68 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 NOBOXO60393 691 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 NAT2P11245 290 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 TPTEP56180 551 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 BACE1P56817 501 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 TUBA4AP68366 448 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 USP41Q3LFD5 358 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 PAGE2BQ5JRK9 111 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 DSG4Q86SJ6 1040 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 FBXO16Q8IX29 292 aaPredicted RBP13.21□□□□□ -0.3
MSH6-214ENST00000616033 TNIP2Q8NFZ5 429 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 STYXQ8WUJ0 223 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 SLC35F5Q8WV83 523 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 C1orf50Q9BV19 199 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 SLC25A23Q9BV35 468 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 NOL6Q9H6R4 1146 aaKnown RBP13.21□□□□□ -0.3
MSH6-214ENST00000616033 SETD4Q9NVD3 440 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 TBC1D13Q9NVG8 400 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 COL4A5P29400 1685 aa13.21□□□□□ -0.3
MSH6-214ENST00000616033 TTC24A2A3L6 582 aaPredicted RBP13.2□□□□□ -0.3
MSH6-214ENST00000616033 AP2A1O95782 977 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 C8BP07358 591 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 ATICP31939 592 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 ARPP19P56211 112 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 FKBP1AP62942 108 aaKnown RBP13.2□□□□□ -0.3
MSH6-214ENST00000616033 CLCQ05315 142 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 ENPEPQ07075 957 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 PPP2R2DQ66LE6 453 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 ANKRD34AQ69YU3 496 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 TBPL2Q6SJ96 375 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 ARHGAP36Q6ZRI8 547 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 CLEC14AQ86T13 490 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 AFAP1L2Q8N4X5 818 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 NPWQ8N729 165 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 ANKRD52Q8NB46 1076 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 NIFKQ9BYG3 293 aaKnown RBP13.2□□□□□ -0.3
MSH6-214ENST00000616033 RHOJQ9H4E5 214 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 HACD3Q9P035 362 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 ADAM28Q9UKQ2 775 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 TRAF6Q9Y4K3 522 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 IL18RAPO95256 599 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 OCA2Q04671 838 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 LAPTM5Q13571 262 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 MAPRE2Q15555 327 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 CPSF7Q8N684 471 aaKnown RBP13.2□□□□□ -0.3
MSH6-214ENST00000616033 ESAMQ96AP7 390 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 ITCHQ96J02 903 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 HNRNPABQ99729 332 aaKnown RBP13.2□□□□□ -0.3
MSH6-214ENST00000616033 PRDM8Q9NQV8 689 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 PIGVQ9NUD9 493 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 TIMM22Q9Y584 194 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 SCN1AP35498 2009 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 SLCO1B7G3V0H7 640 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 TNPO2O14787 897 aaKnown RBP13.2□□□□□ -0.3
MSH6-214ENST00000616033 CD68P34810 354 aaPredicted RBP13.2□□□□□ -0.3
MSH6-214ENST00000616033 SLC1A2P43004 574 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 SEPHS1P49903 392 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 NFYCQ13952 458 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 GRB7Q14451 532 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 SQLEQ14534 574 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 TARBP2Q15633 366 aaKnown RBP13.2□□□□□ -0.3
MSH6-214ENST00000616033 TMEM135Q86UB9 458 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 HS3ST5Q8IZT8 346 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 TMEM151AQ8N4L1 468 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 PCYOX1LQ8NBM8 494 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 TRPM4Q8TD43 1214 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 SNX19Q92543 992 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 LHPPQ9H008 270 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 SLAMF8Q9P0V8 285 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 U3KQV3 271 aa13.2□□□□□ -0.3
MSH6-214ENST00000616033 DLGAP1O14490 977 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 H2AFYO75367 372 aaKnown RBP13.19□□□□□ -0.3
MSH6-214ENST00000616033 ZNF12P17014 697 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 DDX5P17844 614 aaKnown RBP13.19□□□□□ -0.3
MSH6-214ENST00000616033 IDUAP35475 653 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 NR4A2P43354 598 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 RPS9P46781 194 aaKnown RBP13.19□□□□□ -0.3
MSH6-214ENST00000616033 INAQ16352 499 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 PIM3Q86V86 326 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 TMEM126BQ8IUX1 230 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 OR10Q1Q8NGQ4 319 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 C9orf16Q9BUW7 83 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 RNF38Q9H0F5 515 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 C2orf40Q9H1Z8 148 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 RAD21L1Q9H4I0 556 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 CYP3A43Q9HB55 503 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 MID1IP1Q9NPA3 183 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 DDIT4Q9NX09 232 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 TIMM13Q9Y5L4 95 aaPredicted RBP13.19□□□□□ -0.3
MSH6-214ENST00000616033 ZNF638Q14966 1978 aaKnown RBP13.19□□□□□ -0.3
MSH6-214ENST00000616033 TCRBV3S1A0A5B6 114 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 ARPC2O15144 300 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 TRIM24O15164 1050 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 TSPAN3O60637 253 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 CNOT3O75175 753 aaKnown RBP13.19□□□□□ -0.3
MSH6-214ENST00000616033 BEST1O76090 585 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 APOA4P06727 396 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 PTPRAP18433 802 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 NEK2P51955 445 aa13.19□□□□□ -0.3
MSH6-214ENST00000616033 MBTD1Q05BQ5 628 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms