RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TEAD4Q15561 434 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 CNGA3Q16281 694 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 QPCTQ16769 361 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 TSPAN33Q86UF1 283 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 PRELID2Q8N945 189 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 CENPTQ96BT3 561 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 RMDN1Q96DB5 314 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 IFT43Q96FT9 208 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 MRGPRX2Q96LB1 330 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 NAPGQ99747 312 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 A0A0U1RQS6 177 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 LOC285095A0A1B0GVY8 99 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 H0Y8X5 98 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 PGRMC1O00264 195 aaKnown RBP16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 ARHGAP33O14559 1287 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 ZNF185O15231 689 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 ENGP17813 658 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 GM2AP17900 193 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 TCP1P17987 556 aaKnown RBP16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 CLDN2P57739 230 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 BNC1Q01954 994 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 GRIK2Q13002 908 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 AGERQ15109 404 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 PAPD7Q5XG87 772 aaKnown RBP16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 CRTC1Q6UUV9 634 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 GCNT7Q6ZNI0 430 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 ARHGEF18Q6ZSZ5 1173 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 CBARPQ8N350 705 aaPredicted RBP16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 MFSD2AQ8NA29 543 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 DENND6BQ8NEG7 585 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 IPMKQ8NFU5 416 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 ACTRT1Q8TDG2 376 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 LYSMD1Q96S90 227 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 NAP1L3Q99457 506 aaPredicted RBP16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 MLPHQ9BV36 600 aaPredicted RBP16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 C1QTNF7Q9BXJ2 289 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 HOMER3Q9NSC5 361 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 SMARCAL1Q9NZC9 954 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 DRG1Q9Y295 367 aaKnown RBP16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 ANKRD6Q9Y2G4 727 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 HS3ST3A1Q9Y663 406 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 ADAMTS9Q9P2N4 1935 aa16.59■□□□□ 0.25
CCDC28A-202ENST00000611852 LZTS3O60299 673 aaPredicted RBP16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 GDF9O60383 454 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 ANXA9O76027 345 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 RECQL5O94762 991 aaPredicted RBP16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 NDST3O95803 873 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 EPOP01588 193 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 SYPP08247 313 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 GEMP55040 296 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 ARHGEF7Q14155 803 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 KIF19Q2TAC6 998 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 P3H1Q32P28 736 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 AASDHQ4L235 1098 aaPredicted RBP16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 LRRC66Q68CR7 880 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 ABI3BPQ7Z7G0 1075 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 IQCHQ86VS3 1027 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 TP53I13Q8NBR0 393 aaPredicted RBP16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 BMFQ96LC9 184 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 COQ10AQ96MF6 247 aa16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 AAR2Q9Y312 384 aaKnown RBP16.58■□□□□ 0.24
CCDC28A-202ENST00000611852 CTAGE9A4FU28 777 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 POM121BA6NF01 834 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 PSMD11O00231 422 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 FPGTO14772 594 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 METTL18O95568 372 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 IFNB1P01574 187 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 ATXN1LP0C7T5 689 aaKnown RBP16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 ZNF30P17039 623 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 LMNB2Q03252 620 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 OVGP1Q12889 678 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 PRPSAP1Q14558 356 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 LRRC14Q15048 493 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 ACOX1Q15067 660 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 PARP6Q2NL67 630 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 WSCD2Q2TBF2 565 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 CCDC70Q6NSX1 233 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 HSD11B1LQ7Z5J1 315 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 KLHDC8BQ8IXV7 354 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 SKA1Q96BD8 255 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 PPP1R2P1Q96PQ5 205 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 EDEM2Q9BV94 578 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 AP1M1Q9BXS5 423 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 ZDHHC5Q9C0B5 715 aa16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 MBNL1Q9NR56 388 aaKnown RBP16.57■□□□□ 0.24
CCDC28A-202ENST00000611852 TLR4O00206 839 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 CDX4O14627 284 aaPredicted RBP16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 IGFALSP35858 605 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 CHRNA4P43681 627 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 KCNJ1P48048 391 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 C21orf59P57076 290 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 ETF1P62495 437 aaKnown RBP16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 PTSQ03393 145 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 SLC1A5Q15758 541 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 CDKN3Q16667 212 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 SIRPB2Q5JXA9 342 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 DENND2CQ68D51 928 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 KYAT3Q6YP21 454 aaKnown RBP16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 GLIS1Q8NBF1 620 aa16.56■□□□□ 0.24
CCDC28A-202ENST00000611852 OR13H1Q8NG92 308 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms