RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 HLA-BQ31612 363 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 RABEPKQ7Z6M1 372 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 SLC22A18ASQ8N1D0 253 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 RASGEF1CQ8N431 466 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 MINDY1Q8N5J2 469 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 GLIS1Q8NBF1 620 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 PLA2G15Q8NCC3 412 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 SPATA13Q96N96 652 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 VAT1Q99536 393 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 GBA3Q9H227 469 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 FAM153AQ9UHL3 310 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 TRHDEQ9UKU6 1024 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 HS3ST3A1Q9Y663 406 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 PCDH15Q96QU1 1955 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 CEP192Q8TEP8 1941 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 LOC285095A0A1B0GVY8 99 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 CFAP69A5D8W1 941 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 ANKRD66B4E2M5 251 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 ZNF185O15231 689 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 KIF5CO60282 957 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 CLDN7O95471 211 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 AGTP01019 485 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 C1SP09871 688 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 ATXN1LP0C7T5 689 aaKnown RBP14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 ETS1P14921 441 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 PSMB4P28070 264 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 PFN3P60673 137 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 LMNB2Q03252 620 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 AGERQ15109 404 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 IRF4Q15306 451 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 SLC14A2Q15849 920 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 RSPO4Q2I0M5 234 aaPredicted RBP14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 DENND2CQ68D51 928 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 Q6ZSR6 202 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 TECPR1Q7Z6L1 1165 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 PRELID2Q8N945 189 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 RMDN1Q96DB5 314 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 OSBPL9Q96SU4 736 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 GAREM1Q9H706 876 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 GPR27Q9NS67 375 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 KCND1Q9NSA2 647 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 RSPH14Q9UHP6 348 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 PNMA8BQ9ULN7 279 aaPredicted RBP14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 FNDC3AQ9Y2H6 1198 aaKnown RBP14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 SPO11Q9Y5K1 396 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 PLXNA2O75051 1894 aa14.24□□□□□ -0.13
SHKBP1-217ENST00000598558 CAPN8A6NHC0 703 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 K7ESM1 405 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 LZTS3O60299 673 aaPredicted RBP14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 GCATO75600 419 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 SYPP08247 313 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 ELFN1P0C7U0 828 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 THEGLP0DJG4 465 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 ADRA1AP35348 466 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 ETV3P41162 512 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 KCNJ1P48048 391 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 EPHB1P54762 984 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 RPL26P61254 145 aaKnown RBP14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 GNG11P61952 73 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 ACOX1Q15067 660 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 TEAD4Q15561 434 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 CCNG2Q16589 344 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 LONRF2Q1L5Z9 754 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 ZNF423Q2M1K9 1284 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 FAXCQ5TGI0 409 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 LRRC66Q68CR7 880 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 KCTD16Q68DU8 428 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 Q6ZVL8 140 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 IQCHQ86VS3 1027 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 ZSCAN30Q86W11 494 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 KLHDC8BQ8IXV7 354 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 TAB3Q8N5C8 712 aaPredicted RBP14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 RTP4Q96DX8 246 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 KLHDC7BQ96G42 594 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 LYSMD1Q96S90 227 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 TMEM9BQ9NQ34 198 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 DNAAF2Q9NVR5 837 aaKnown RBP14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 HAUS2Q9NVX0 235 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 SNX12Q9UMY4 172 aa14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 RPL26L1Q9UNX3 145 aaKnown RBP14.23□□□□□ -0.13
SHKBP1-217ENST00000598558 AURKAO14965 403 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 FOXD2O60548 495 aaPredicted RBP14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 NDST3O95803 873 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 ZSCAN5DPP0CG00 497 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 CYP2A6P11509 494 aaPredicted RBP14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 CD59P13987 128 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 STC1P52823 247 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 LIMK1P53667 647 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 C21orf59P57076 290 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 ARHGAP8P85298 464 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 IL9RQ01113 521 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 BNIP3Q12983 259 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 FZD2Q14332 565 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 SPARCL1Q14515 664 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 INPP5AQ14642 412 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 LRRC14Q15048 493 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 UAP1L1Q3KQV9 507 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 SIRPB2Q5JXA9 342 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 DENND5AQ6IQ26 1287 aa14.22□□□□□ -0.13
SHKBP1-217ENST00000598558 TTC27Q6P3X3 843 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms