RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 NSUN2Q08J23 767 aaKnown RBP eCLIP12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 MPP3Q13368 585 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 MORF4L2Q15014 288 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 TPSAB1Q15661 275 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 SLC14A2Q15849 920 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 PTPRNQ16849 979 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 FAM182AQ5T1J6 154 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 ATXN7L2Q5T6C5 722 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 RNASEH2BQ5TBB1 312 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 EGFLAMQ63HQ2 1017 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 SDE2Q6IQ49 451 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 PPP1R21Q6ZMI0 780 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 Q6ZVU0 165 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 SRLQ86TD4 932 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 HOOK3Q86VS8 718 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 CHPFQ8IZ52 775 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 PAF1Q8N7H5 531 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 KCNV2Q8TDN2 545 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 SEC14L1Q92503 715 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 CPT1BQ92523 772 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 RBM15Q96T37 977 aaKnown RBP eCLIP12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 ANKZF1Q9H8Y5 726 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 GDF3Q9NR23 364 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 EIF2B3Q9NR50 452 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 THAP10Q9P2Z0 257 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 MTRF1LQ9UGC7 380 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 FAM153AQ9UHL3 310 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 SLCO3A1Q9UIG8 710 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 PCOLCE2Q9UKZ9 415 aa12.15□□□□□ -0.46
SHKBP1-213ENST00000597325 DOPEY2Q9Y3R5 2298 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 ANTXRLA6NF34 631 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 TTC34A8MYJ7 566 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 B8ZZF3 427 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 K7EQS6 105 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 PMPCBO75439 489 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 AP2A1O95782 977 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 HNRNPLP14866 589 aaKnown RBP eCLIP12.14□□□□□ -0.471e-11■■■■□ 20.2
SHKBP1-213ENST00000597325 IVDP26440 423 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 SERPINA4P29622 427 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 TIE1P35590 1138 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 RGRP47804 291 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 CSNK1DP48730 415 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 CCNHP51946 323 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 SKOR1P84550 965 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 CDK16Q00536 496 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 NIPAL4Q0D2K0 466 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 GRM3Q14832 879 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 PCSK7Q16549 785 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 HNRNPA1L2Q32P51 320 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 MAP7D1Q3KQU3 841 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 CARD16Q5EG05 197 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 SYCP2LQ5T4T6 812 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 CFAP58Q5T655 872 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 NAPEPLDQ6IQ20 393 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 GPR155Q7Z3F1 870 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 LINC00523Q86TU6 105 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 PLPP6Q8IY26 295 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 PDCD7Q8N8D1 485 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 IPMKQ8NFU5 416 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 OR6K2Q8NGY2 324 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 SPATA22Q8NHS9 363 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 BAHD1Q8TBE0 780 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 ARRDC2Q8TBH0 407 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 IFT43Q96FT9 208 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 MYO19Q96H55 970 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 TUBGCP5Q96RT8 1024 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 SEMA4CQ9C0C4 833 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 ZDHHC6Q9H6R6 413 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 ATP13A3Q9H7F0 1226 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 NOD2Q9HC29 1040 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 UBP1Q9NZI7 540 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 HECAQ9UBI9 543 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 SUN2Q9UH99 717 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 STARD13Q9Y3M8 1113 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 STON1Q9Y6Q2 735 aa12.14□□□□□ -0.47
SHKBP1-213ENST00000597325 UTP20O75691 2785 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 TTC24A2A3L6 582 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 ERVH48-1M5A8F1 160 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 TLX3O43711 291 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 SYNCRIPO60506 623 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 POP4O95707 220 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 MT-CYBP00156 380 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 EPHX1P07099 455 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 HLA-EP13747 358 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 CR2P20023 1033 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 PRKCHP24723 683 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 TNFRSF8P28908 595 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 IL12RB1P42701 662 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 MAGEA6P43360 314 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 PLTPP55058 493 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 WNT3AP56704 352 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 MRPS21P82921 87 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 BCL2L1Q07817 233 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 KCNJ11Q14654 390 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 STARD3Q14849 445 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 CRY1Q16526 586 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 C2orf27AQ580R0 203 aa12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 HIBCHQ6NVY1 386 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-213ENST00000597325 TMEM92Q6UXU6 159 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms