RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 KIAA1211LQ6NV74 962 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 LYSMD3Q7Z3D4 306 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 TTC30BQ8N4P2 665 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 OR2T3Q8NH03 318 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 STYXQ8WUJ0 223 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 ARRDC3Q96B67 414 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 CERS2Q96G23 380 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 CCDC77Q9BR77 488 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 GPR63Q9BZJ6 419 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 POLR3BQ9NW08 1133 aaPredicted RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 MOCS1Q9NZB8 636 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 SLC2A6Q9UGQ3 507 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 RIMKLBQ9ULI2 386 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 KCTD3Q9Y597 815 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 C1orf232A0A0U1RR37 186 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 BUD23O43709 281 aaKnown RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 ADH1BP00325 375 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 IVLP07476 585 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 CHRNB1P11230 501 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 CYP2A6P11509 494 aaPredicted RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 TIMP2P16035 220 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 COL9A1P20849 921 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 LPOP22079 712 aaPredicted RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 METAP1P53582 386 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 STARD6P59095 220 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 SATB1Q01826 763 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 EFTUD2Q15029 972 aaKnown RBP eCLIP14.69□□□□□ -0.063e-6■■□□□ 13.2
VRK3-212ENST00000596814 CST6Q15828 149 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 CNGA3Q16281 694 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 LONRF1Q17RB8 773 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 SKIDA1Q1XH10 827 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 ZNF776Q68DI1 518 aaPredicted RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 CYS1Q717R9 158 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 CACUL1Q86Y37 369 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 UNC5BQ8IZJ1 945 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 SIX5Q8N196 739 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 OR13J1Q8NGT2 312 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 DNAJC1Q96KC8 554 aaKnown RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 CYTH2Q99418 400 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 ZFYVE1Q9HBF4 777 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 LTB4R2Q9NPC1 389 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 PCDH12Q9NPG4 1184 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 PPANQ9NQ55 473 aaKnown RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 IL1RAPL1Q9NZN1 696 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 B4GALT6Q9UBX8 382 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 MMP17Q9ULZ9 603 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 A0A1W2PQF6 199 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 KANSL1LA0AUZ9 987 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 NEK3P51956 506 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 COPAP53621 1224 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 ACVR1Q04771 509 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 ZNF844Q08AG5 666 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 UBXN2BQ14CS0 331 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 SMAD1Q15797 465 aaKnown RBP14.68□□□□□ -0.06
VRK3-212ENST00000596814 KBTBD12Q3ZCT8 623 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 CEP85LQ5SZL2 805 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 PDPK2PQ6A1A2 396 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 ERAP2Q6P179 960 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 ZNF449Q6P9G9 518 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 TTC7BQ86TV6 843 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 TSPAN33Q86UF1 283 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 KCNMB4Q86W47 210 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 RASSF3Q86WH2 238 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 GJD3Q8N144 294 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 ZNF687Q8N1G0 1237 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 SYNPOQ8N3V7 929 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 OR13C4Q8NGS5 318 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 CDKL2Q92772 493 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 C20orf96Q9NUD7 363 aaPredicted RBP14.68□□□□□ -0.06
VRK3-212ENST00000596814 MUTYHQ9UIF7 546 aa14.68□□□□□ -0.06
VRK3-212ENST00000596814 ZNF106Q9H2Y7 1883 aaKnown RBP14.68□□□□□ -0.06
VRK3-212ENST00000596814 A0A0U1RQS6 177 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 FAM159BA6NKW6 160 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 MID1O15344 667 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 STX7O15400 261 aaKnown RBP14.67□□□□□ -0.06
VRK3-212ENST00000596814 RPP40O75818 363 aaKnown RBP14.67□□□□□ -0.06
VRK3-212ENST00000596814 VAPBO95292 243 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 C1QAP02745 245 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 ERVK-10P10266 1014 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 LHCGRP22888 699 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 VIPR1P32241 457 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 HMGCLP35914 325 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 RPS14P62263 151 aaKnown RBP14.67□□□□□ -0.06
VRK3-212ENST00000596814 PRAMEP78395 509 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 TMPRSS15P98073 1019 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 SEMG2Q02383 582 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 MGAT5Q09328 741 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 PTPRCAPQ14761 206 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 CDKN3Q16667 212 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 LRRC66Q68CR7 880 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 FBXL19Q6PCT2 694 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 CRTC1Q6UUV9 634 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 Q6ZS52 159 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 ERN2Q76MJ5 926 aaKnown RBP14.67□□□□□ -0.06
VRK3-212ENST00000596814 OR4K2Q8NGD2 314 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 EPS8L3Q8TE67 593 aaKnown RBP14.67□□□□□ -0.06
VRK3-212ENST00000596814 ZBTB9Q96C00 473 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 HDAC8Q9BY41 377 aa14.67□□□□□ -0.06
VRK3-212ENST00000596814 NLE1Q9NVX2 485 aaPredicted RBP14.67□□□□□ -0.06
VRK3-212ENST00000596814 PKP3Q9Y446 797 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms