RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 LIG3P49916 1009 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 ITGA8P53708 1063 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 TUBB4BP68371 445 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 GUCY2DQ02846 1103 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 PTPRRQ15256 657 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 TEX35Q5T0J7 233 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 DENND2CQ68D51 928 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 KIAA0895LQ68EN5 471 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 LRRC8BQ6P9F7 803 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 ZC3H14Q6PJT7 736 aaKnown RBP13.65□□□□□ -0.22
VMP1-210ENST00000589823 LIPIQ6XZB0 460 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 LPCAT2Q7L5N7 544 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 GLT6D1Q7Z4J2 308 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 TSPAN33Q86UF1 283 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 HORMAD1Q86X24 394 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 ZBTB44Q8NCP5 570 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 CADM4Q8NFZ8 388 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 FOXJ1Q92949 421 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 SMIM14Q96QK8 99 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 FRMD8Q9BZ67 464 aaPredicted RBP13.65□□□□□ -0.22
VMP1-210ENST00000589823 C6orf106Q9H6K1 298 aaPredicted RBP13.65□□□□□ -0.22
VMP1-210ENST00000589823 ZFYVE1Q9HBF4 777 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 XAB2Q9HCS7 855 aaKnown RBP13.65□□□□□ -0.22
VMP1-210ENST00000589823 PIH1D1Q9NWS0 290 aaKnown RBP13.65□□□□□ -0.22
VMP1-210ENST00000589823 BFARQ9NZS9 450 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 WHRNQ9P202 907 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 SHOC2Q9UQ13 582 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 ZNF711Q9Y462 761 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 CUL9Q8IWT3 2517 aa13.65□□□□□ -0.22
VMP1-210ENST00000589823 IGLON5A6NGN9 336 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 C2orf81A6NN90 581 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 PSMD11O00231 422 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 HRO43593 1189 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 LZTS3O60299 673 aaPredicted RBP13.64□□□□□ -0.23
VMP1-210ENST00000589823 TM7SF2O76062 418 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 CLDN7O95471 211 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 CRTAMO95727 393 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 SLC4A1P02730 911 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 MLNP12872 115 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 C6P13671 934 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 TPH1P17752 444 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 LHCGRP22888 699 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 MAT2AP31153 395 aaKnown RBP13.64□□□□□ -0.23
VMP1-210ENST00000589823 NPY2RP49146 381 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 CCR5P51681 352 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 DRG2P55039 364 aaKnown RBP13.64□□□□□ -0.23
VMP1-210ENST00000589823 SESN2P58004 480 aaPredicted RBP13.64□□□□□ -0.23
VMP1-210ENST00000589823 CAV1Q03135 178 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 RALGDSQ12967 914 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 SRSF5Q13243 272 aaKnown RBP13.64□□□□□ -0.23
VMP1-210ENST00000589823 SGCGQ13326 291 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 LAMB3Q13751 1172 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 SEPT6Q14141 434 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 POU6F1Q14863 301 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 ACOX1Q15067 660 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 ELF2Q15723 593 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 CNGA3Q16281 694 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 LRRC66Q68CR7 880 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 HIBCHQ6NVY1 386 aaPredicted RBP13.64□□□□□ -0.23
VMP1-210ENST00000589823 LYSMD3Q7Z3D4 306 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 TRIM69Q86WT6 500 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 BRSK1Q8TDC3 778 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 C1QTNF7Q9BXJ2 289 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 IRF2BPLQ9H1B7 796 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 EPB41L5Q9HCM4 733 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 FAM114A2Q9NRY5 505 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.64□□□□□ -0.23
VMP1-210ENST00000589823 ZFR2Q9UPR6 939 aaKnown RBP13.64□□□□□ -0.23
VMP1-210ENST00000589823 SPO11Q9Y5K1 396 aa13.64□□□□□ -0.23
VMP1-210ENST00000589823 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 A0A0U1RQS6 177 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 METTL12A8MUP2 240 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 MEI4A8MW99 385 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 LILRB5O75023 590 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 RHOBTB1O94844 696 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 RHOXF2BP0C7M4 288 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 NUDT1P36639 197 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 STC1P52823 247 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 PPP2CBP62714 309 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 PPP2CAP67775 309 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 PDE1BQ01064 536 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 PTSQ03393 145 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 SIM2Q14190 667 aaPredicted RBP13.63□□□□□ -0.23
VMP1-210ENST00000589823 TAF1AQ15573 450 aaPredicted RBP13.63□□□□□ -0.23
VMP1-210ENST00000589823 TMEM259Q4ZIN3 620 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 SETMARQ53H47 684 aaPredicted RBP13.63□□□□□ -0.23
VMP1-210ENST00000589823 SPDYCQ5MJ68 293 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 CERCAMQ5T4B2 595 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 SEL1L3Q68CR1 1132 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 ZNF534Q76KX8 674 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 TMEFF1Q8IYR6 380 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 DEFB119Q8N690 84 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 LRRN4CLQ8ND94 238 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 PPHLN1Q8NEY8 458 aaKnown RBP13.63□□□□□ -0.23
VMP1-210ENST00000589823 SNX19Q92543 992 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 KLK6Q92876 244 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 SERPINB12Q96P63 405 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 HINFPQ9BQA5 517 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 RHOXF2Q9BQY4 288 aa13.63□□□□□ -0.23
VMP1-210ENST00000589823 SLC17A9Q9BYT1 436 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms