RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 DUSP15Q9H1R2 295 aaPredicted RBP17.12■□□□□ 0.33
NUP88-210ENST00000574867 CASS4Q9NQ75 786 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 SHOC2Q9UQ13 582 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 ZNF711Q9Y462 761 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 C1orf232A0A0U1RR37 186 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 A0A1W2PQU0 124 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 LATO43561 262 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 TMEM63AO94886 807 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 LIG3P49916 1009 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 PTPN5P54829 565 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 PPP2CBP62714 309 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 PPP2CAP67775 309 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 MRPS25P82663 173 aaKnown RBP17.12■□□□□ 0.33
NUP88-210ENST00000574867 SRSF5Q13243 272 aaKnown RBP17.12■□□□□ 0.33
NUP88-210ENST00000574867 ELF2Q15723 593 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 CNGA3Q16281 694 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 ANKRD22Q5VYY1 191 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 LRRC66Q68CR7 880 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 DUPD1Q68J44 220 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 CRTC1Q6UUV9 634 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 LIPIQ6XZB0 460 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 OR52K1Q8NGK4 314 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 TRIM31Q9BZY9 425 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 XAB2Q9HCS7 855 aaKnown RBP17.12■□□□□ 0.33
NUP88-210ENST00000574867 TCRBV7S3A2A0A539 114 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 PIRTP0C851 137 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 MLNP12872 115 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 C6P13671 934 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 TERF1P54274 439 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 TCF15Q12870 199 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 CALCOCO2Q13137 446 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 PMS2CLQ68D20 193 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 LRRC8BQ6P9F7 803 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 GLT6D1Q7Z4J2 308 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 TSPAN33Q86UF1 283 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 BLOC1S5Q8TDH9 187 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 ASB12Q8WXK4 309 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 ZC3H10Q96K80 434 aaKnown RBP17.11■□□□□ 0.33
NUP88-210ENST00000574867 SMIM14Q96QK8 99 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 FRMD8Q9BZ67 464 aaPredicted RBP17.11■□□□□ 0.33
NUP88-210ENST00000574867 ZFYVE1Q9HBF4 777 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 KCTD5Q9NXV2 234 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 WHRNQ9P202 907 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 ZFR2Q9UPR6 939 aaKnown RBP17.11■□□□□ 0.33
NUP88-210ENST00000574867 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.11■□□□□ 0.33
NUP88-210ENST00000574867 SPO11Q9Y5K1 396 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 CEP192Q8TEP8 1941 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 METTL12A8MUP2 240 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 MMP20O60882 483 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 TM7SF2O76062 418 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 RHOBTB1O94844 696 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 RPL21P46778 160 aaKnown RBP17.11■□□□□ 0.33
NUP88-210ENST00000574867 SEMG2Q02383 582 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 CDKN3Q16667 212 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 SETMARQ53H47 684 aaPredicted RBP17.11■□□□□ 0.33
NUP88-210ENST00000574867 SEL1L3Q68CR1 1132 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 LYSMD3Q7Z3D4 306 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 C1QTNF7Q9BXJ2 289 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 C1QTNF2Q9BXJ5 285 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 GPR63Q9BZJ6 419 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 SNX24Q9Y343 169 aa17.11■□□□□ 0.33
NUP88-210ENST00000574867 MEI4A8MW99 385 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 A8MX80 341 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 FSBPO95073 299 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 CRTAMO95727 393 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 IGHV4-34P06331 123 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 GRIA1P42261 906 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 STC1P52823 247 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 DRG2P55039 364 aaKnown RBP17.1■□□□□ 0.33
NUP88-210ENST00000574867 PDE1BQ01064 536 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 SIM2Q14190 667 aaPredicted RBP17.1■□□□□ 0.33
NUP88-210ENST00000574867 AGERQ15109 404 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 PTPRRQ15256 657 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 ZNF284Q2VY69 593 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 PLK5Q496M5 336 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 HIBCHQ6NVY1 386 aaPredicted RBP17.1■□□□□ 0.33
NUP88-210ENST00000574867 ZNF534Q76KX8 674 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 BRSK1Q8TDC3 778 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 BIRC7Q96CA5 298 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 HSPA12BQ96MM6 686 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 DPH5Q9H2P9 285 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 DMTF1Q9Y222 760 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 LRRK1Q38SD2 2015 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 TRPM6Q9BX84 2022 aa17.1■□□□□ 0.33
NUP88-210ENST00000574867 SPAG17Q6Q759 2223 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 IGLON5A6NGN9 336 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 LZTS3O60299 673 aaPredicted RBP17.09■□□□□ 0.33
NUP88-210ENST00000574867 CLDN7O95471 211 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 HMGCLP35914 325 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 ITGA8P53708 1063 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 SGCGQ13326 291 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 MSLNQ13421 630 aaPredicted RBP17.09■□□□□ 0.33
NUP88-210ENST00000574867 LAMB3Q13751 1172 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 TAF1AQ15573 450 aaPredicted RBP17.09■□□□□ 0.33
NUP88-210ENST00000574867 ARMC3Q5W041 872 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 TMEFF1Q8IYR6 380 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 SEC14L1Q92503 715 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 EPC1Q9H2F5 836 aa17.09■□□□□ 0.33
NUP88-210ENST00000574867 BFARQ9NZS9 450 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms