RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 GDAP1L1Q96MZ0 367 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 SLC25A23Q9BV35 468 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 TRIM55Q9BYV6 548 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 TWSG1Q9GZX9 223 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 RUBCNLQ9H714 662 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 METTL14Q9HCE5 456 aaKnown RBP18.12■□□□□ 0.49
CLK3-227ENST00000570296 APMAPQ9HDC9 416 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 PRSS38A1L453 326 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 POLR1CO15160 346 aaPredicted RBP18.11■□□□□ 0.49
CLK3-227ENST00000570296 SLC16A3O15427 465 aaKnown RBP18.11■□□□□ 0.49
CLK3-227ENST00000570296 MED7O43513 233 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 DAB1O75553 588 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 GRAP2O75791 330 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 ARTNQ5T4W7 220 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 ATXN7L2Q5T6C5 722 aaPredicted RBP18.11■□□□□ 0.49
CLK3-227ENST00000570296 OTUD1Q5VV17 481 aaPredicted RBP18.11■□□□□ 0.49
CLK3-227ENST00000570296 JMJD6Q6NYC1 403 aaPredicted RBP18.11■□□□□ 0.49
CLK3-227ENST00000570296 SLAMF7Q9NQ25 335 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 RRN3Q9NYV6 651 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 MAP10Q9P2G4 905 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 RCOR3Q9P2K3 495 aaPredicted RBP18.11■□□□□ 0.49
CLK3-227ENST00000570296 MOSPD1Q9UJG1 213 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 MFHAS1Q9Y4C4 1052 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 PCDHGA6Q9Y5G7 932 aa18.11■□□□□ 0.49
CLK3-227ENST00000570296 NIPBLQ6KC79 2804 aaeCLIP18.1■□□□□ 0.49
CLK3-227ENST00000570296 PDE2AO00408 941 aaPredicted RBP18.1■□□□□ 0.49
CLK3-227ENST00000570296 CREG1O75629 220 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 TRIM23P36406 574 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 LIG3P49916 1009 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 ZXDCQ2QGD7 858 aaPredicted RBP18.1■□□□□ 0.49
CLK3-227ENST00000570296 ANKRD40Q6AI12 368 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 WDR74Q6RFH5 385 aaPredicted RBP18.1■□□□□ 0.49
CLK3-227ENST00000570296 C6orf15Q6UXA7 325 aaPredicted RBP18.1■□□□□ 0.49
CLK3-227ENST00000570296 MCEMP1Q8IX19 187 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 NAGSQ8N159 534 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 Q8NA96 180 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 HCAR2Q8TDS4 363 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 PATE1Q8WXA2 126 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 SLC35C1Q96A29 364 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 AHCYL2Q96HN2 611 aaKnown RBP18.1■□□□□ 0.49
CLK3-227ENST00000570296 ZYG11BQ9C0D3 744 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 PCDH12Q9NPG4 1184 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 TMEM51Q9NW97 253 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 TRNAU1APQ9NX07 287 aaKnown RBP18.1■□□□□ 0.49
CLK3-227ENST00000570296 PCDHGB7Q9Y5F8 929 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 CROCCQ5TZA2 2017 aa18.1■□□□□ 0.49
CLK3-227ENST00000570296 PIPSLA2A3N6 862 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 KATNA1O75449 491 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 CBX6O95503 412 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 ACVRL1P37023 503 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 GCNT1Q02742 428 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 NR6A1Q15406 480 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 SNAP47Q5SQN1 464 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 ERAP2Q6P179 960 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 DRC7Q8IY82 874 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 OR10G6Q8NH81 332 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 ULBP3Q9BZM4 244 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 TTYH3Q9C0H2 523 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 WDR26Q9H7D7 661 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 CARS2Q9HA77 564 aaKnown RBP18.09■□□□□ 0.49
CLK3-227ENST00000570296 PCDHA7Q9UN72 937 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 CNTN6Q9UQ52 1028 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 ZNF451Q9Y4E5 1061 aa18.09■□□□□ 0.49
CLK3-227ENST00000570296 TSPAN11A1L157 253 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 CFAP69A5D8W1 941 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 A6NCN8 305 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 A8MU76 341 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 PMM2O15305 246 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 DPM1O60762 260 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 SRGAP2O75044 1071 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 IGSF6O95976 241 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 MMP12P39900 470 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 ME1P48163 572 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 UGP2Q16851 508 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 C11orf57Q6ZUT1 292 aaPredicted RBP18.08■□□□□ 0.48
CLK3-227ENST00000570296 SLC26A9Q7LBE3 791 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 SLC47A2Q86VL8 602 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 HPS6Q86YV9 775 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 ZNF606Q8WXB4 792 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 SEC14L1Q92503 715 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 PGAP3Q96FM1 320 aaPredicted RBP18.08■□□□□ 0.48
CLK3-227ENST00000570296 CPXM1Q96SM3 734 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 NPY6RQ99463 290 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 UPF2Q9HAU5 1272 aaKnown RBP18.08■□□□□ 0.48
CLK3-227ENST00000570296 USP25Q9UHP3 1055 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 HPCAL4Q9UM19 191 aa18.08■□□□□ 0.48
CLK3-227ENST00000570296 ANKHD1Q8IWZ3 2542 aaKnown RBP18.07■□□□□ 0.48
CLK3-227ENST00000570296 HEATR9A2RTY3 570 aa18.07■□□□□ 0.48
CLK3-227ENST00000570296 LETM1O95202 739 aaPredicted RBP18.07■□□□□ 0.48
CLK3-227ENST00000570296 F9P00740 461 aa18.07■□□□□ 0.48
CLK3-227ENST00000570296 FMO5P49326 533 aa18.07■□□□□ 0.48
CLK3-227ENST00000570296 SLC30A9Q6PML9 568 aa18.07■□□□□ 0.48
CLK3-227ENST00000570296 OLFML1Q6UWY5 402 aa18.07■□□□□ 0.48
CLK3-227ENST00000570296 THAP4Q8WY91 577 aa18.07■□□□□ 0.48
CLK3-227ENST00000570296 PNPLA2Q96AD5 504 aa18.07■□□□□ 0.48
CLK3-227ENST00000570296 LGR4Q9BXB1 951 aa18.07■□□□□ 0.48
CLK3-227ENST00000570296 PPP4R2Q9NY27 417 aa18.07■□□□□ 0.48
CLK3-227ENST00000570296 PPARGC1AQ9UBK2 798 aaKnown RBP18.07■□□□□ 0.48
CLK3-227ENST00000570296 NFKBIAP25963 317 aa18.06■□□□□ 0.48
CLK3-227ENST00000570296 AK4P27144 223 aaPredicted RBP18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms