RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SPOCD1Q6ZMY3 1216 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 DAAM2Q86T65 1068 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 PARGQ86W56 976 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 KATNAL2Q8IYT4 538 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 RCOR2Q8IZ40 523 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 CBARPQ8N350 705 aaPredicted RBP15.09■□□□□ 0.01
VPS39-210ENST00000568357 CNTD1Q8N815 330 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 PLA2G15Q8NCC3 412 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 KRT35Q92764 455 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 CNDP2Q96KP4 475 aaKnown RBP15.09■□□□□ 0.01
VPS39-210ENST00000568357 ZNF830Q96NB3 372 aaPredicted RBP15.09■□□□□ 0.01
VPS39-210ENST00000568357 SMIM14Q96QK8 99 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 IL12RB2Q99665 862 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 ANP32EQ9BTT0 268 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 AMACRQ9UHK6 382 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 TTLL3Q9Y4R7 772 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 A0A0U1RQJ8 604 aa15.08■□□□□ 0
VPS39-210ENST00000568357 A0A0U1RQS6 177 aa15.08■□□□□ 0
VPS39-210ENST00000568357 BTNL10A8MVZ5 291 aa15.08■□□□□ 0
VPS39-210ENST00000568357 PJA2O43164 708 aa15.08■□□□□ 0
VPS39-210ENST00000568357 CST8O60676 142 aa15.08■□□□□ 0
VPS39-210ENST00000568357 ZRANB2O95218 330 aaKnown RBP eCLIP15.08■□□□□ 0
VPS39-210ENST00000568357 IPO7O95373 1038 aaKnown RBP15.08■□□□□ 0
VPS39-210ENST00000568357 ELFN1P0C7U0 828 aa15.08■□□□□ 0
VPS39-210ENST00000568357 NME1P15531 152 aaKnown RBP15.08■□□□□ 0
VPS39-210ENST00000568357 ZFXP17010 805 aaPredicted RBP15.08■□□□□ 0
VPS39-210ENST00000568357 CTPS1P17812 591 aa15.08■□□□□ 0
VPS39-210ENST00000568357 VAV2P52735 878 aa15.08■□□□□ 0
VPS39-210ENST00000568357 THOP1P52888 689 aa15.08■□□□□ 0
VPS39-210ENST00000568357 IFI35P80217 286 aaPredicted RBP15.08■□□□□ 0
VPS39-210ENST00000568357 AP1B1Q10567 949 aa15.08■□□□□ 0
VPS39-210ENST00000568357 ZBTB17Q13105 803 aa15.08■□□□□ 0
VPS39-210ENST00000568357 DNAJC3Q13217 504 aa15.08■□□□□ 0
VPS39-210ENST00000568357 PDK1Q15118 436 aa15.08■□□□□ 0
VPS39-210ENST00000568357 CNGA3Q16281 694 aa15.08■□□□□ 0
VPS39-210ENST00000568357 ARMC12Q5T9G4 340 aa15.08■□□□□ 0
VPS39-210ENST00000568357 NYAP1Q6ZVC0 841 aa15.08■□□□□ 0
VPS39-210ENST00000568357 SCRN2Q96FV2 425 aa15.08■□□□□ 0
VPS39-210ENST00000568357 TCEAL2Q9H3H9 227 aaPredicted RBP15.08■□□□□ 0
VPS39-210ENST00000568357 PPIL1Q9Y3C6 166 aa15.08■□□□□ 0
VPS39-210ENST00000568357 OR1A2Q9Y585 309 aa15.08■□□□□ 0
VPS39-210ENST00000568357 CELSR3Q9NYQ7 3312 aa15.07■□□□□ 0
VPS39-210ENST00000568357 FAM221BA6H8Z2 402 aa15.07■□□□□ 0
VPS39-210ENST00000568357 NPIPB15A6NHN6 443 aaPredicted RBP15.07■□□□□ 0
VPS39-210ENST00000568357 ENC1O14682 589 aa15.07■□□□□ 0
VPS39-210ENST00000568357 FFAR2O15552 330 aa15.07■□□□□ 0
VPS39-210ENST00000568357 SIGLEC6O43699 453 aa15.07■□□□□ 0
VPS39-210ENST00000568357 HEXIM1O94992 359 aaKnown RBP15.07■□□□□ 0
VPS39-210ENST00000568357 PRLP01236 227 aa15.07■□□□□ 0
VPS39-210ENST00000568357 PCCBP05166 539 aa15.07■□□□□ 0
VPS39-210ENST00000568357 MMP2P08253 660 aa15.07■□□□□ 0
VPS39-210ENST00000568357 ALPIP09923 528 aa15.07■□□□□ 0
VPS39-210ENST00000568357 PECAM1P16284 738 aaPredicted RBP15.07■□□□□ 0
VPS39-210ENST00000568357 JUNDP17535 347 aa15.07■□□□□ 0
VPS39-210ENST00000568357 LHCGRP22888 699 aa15.07■□□□□ 0
VPS39-210ENST00000568357 VIPR1P32241 457 aa15.07■□□□□ 0
VPS39-210ENST00000568357 HNF1BP35680 557 aa15.07■□□□□ 0
VPS39-210ENST00000568357 NAP1L1P55209 391 aaKnown RBP15.07■□□□□ 0
VPS39-210ENST00000568357 HNRNPKP61978 463 aaKnown RBP eCLIP15.07■□□□□ 0
VPS39-210ENST00000568357 ZNF211Q13398 564 aaPredicted RBP15.07■□□□□ 0
VPS39-210ENST00000568357 TFDP2Q14188 446 aa15.07■□□□□ 0
VPS39-210ENST00000568357 PTK2BQ14289 1009 aa15.07■□□□□ 0
VPS39-210ENST00000568357 ACOX1Q15067 660 aa15.07■□□□□ 0
VPS39-210ENST00000568357 CCDC157Q569K6 752 aa15.07■□□□□ 0
VPS39-210ENST00000568357 KAZNQ674X7 775 aa15.07■□□□□ 0
VPS39-210ENST00000568357 HSD11B1LQ7Z5J1 315 aa15.07■□□□□ 0
VPS39-210ENST00000568357 TSPAN33Q86UF1 283 aa15.07■□□□□ 0
VPS39-210ENST00000568357 PELI3Q8N2H9 469 aa15.07■□□□□ 0
VPS39-210ENST00000568357 COQ10AQ96MF6 247 aa15.07■□□□□ 0
VPS39-210ENST00000568357 MCCC1Q96RQ3 725 aaPredicted RBP15.07■□□□□ 0
VPS39-210ENST00000568357 DESI2Q9BSY9 194 aa15.07■□□□□ 0
VPS39-210ENST00000568357 APOOQ9BUR5 198 aa15.07■□□□□ 0
VPS39-210ENST00000568357 CEP41Q9BYV8 373 aa15.07■□□□□ 0
VPS39-210ENST00000568357 CHKBQ9Y259 395 aa15.07■□□□□ 0
VPS39-210ENST00000568357 hCG_1818297A0A087WSY0 165 aa15.06■□□□□ 0
VPS39-210ENST00000568357 TOR1BO14657 336 aa15.06■□□□□ 0
VPS39-210ENST00000568357 SCAMP1O15126 338 aa15.06■□□□□ 0
VPS39-210ENST00000568357 NEBLO76041 1014 aa15.06■□□□□ 0
VPS39-210ENST00000568357 CYP2A6P11509 494 aaPredicted RBP15.06■□□□□ 0
VPS39-210ENST00000568357 NR2C2P49116 596 aa15.06■□□□□ 0
VPS39-210ENST00000568357 PEX5P50542 639 aa15.06■□□□□ 0
VPS39-210ENST00000568357 PROX2Q3B8N5 592 aa15.06■□□□□ 0
VPS39-210ENST00000568357 TFDP3Q5H9I0 405 aa15.06■□□□□ 0
VPS39-210ENST00000568357 DENND2CQ68D51 928 aa15.06■□□□□ 0
VPS39-210ENST00000568357 RBFAQ8N0V3 343 aa15.06■□□□□ 0
VPS39-210ENST00000568357 LRRC57Q8N9N7 239 aa15.06■□□□□ 0
VPS39-210ENST00000568357 ZNF548Q8NEK5 533 aaPredicted RBP15.06■□□□□ 0
VPS39-210ENST00000568357 EXD1Q8NHP7 514 aa15.06■□□□□ 0
VPS39-210ENST00000568357 KIAA1524Q8TCG1 905 aa15.06■□□□□ 0
VPS39-210ENST00000568357 FUBP1Q96AE4 644 aaKnown RBP15.06■□□□□ 0
VPS39-210ENST00000568357 CALR3Q96L12 384 aaKnown RBP15.06■□□□□ 0
VPS39-210ENST00000568357 TDRD1Q9BXT4 1180 aaKnown RBP15.06■□□□□ 0
VPS39-210ENST00000568357 SEPT10Q9P0V9 454 aa15.06■□□□□ 0
VPS39-210ENST00000568357 TRIM10Q9UDY6 481 aa15.06■□□□□ 0
VPS39-210ENST00000568357 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.06■□□□□ 0
VPS39-210ENST00000568357 PCDHA3Q9Y5H8 950 aa15.06■□□□□ 0
VPS39-210ENST00000568357 PLXNB3Q9ULL4 1909 aa15.05■□□□□ 0
VPS39-210ENST00000568357 GRID2IPA4D2P6 1211 aa15.05■□□□□ -0
VPS39-210ENST00000568357 CYSRT1A8MQ03 144 aa15.05■□□□□ -0
VPS39-210ENST00000568357 K7ESM1 405 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms