RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PRRT4C9JH25 899 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 TIMM44O43615 452 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 ZWINTO95229 277 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 POP4O95707 220 aaKnown RBP21.33■■□□□ 1.01
CLN3-209ENST00000561689 GOT2P00505 430 aaKnown RBP21.33■■□□□ 1.01
CLN3-209ENST00000561689 PSMC3P17980 439 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 NNMTP40261 264 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 CCNFP41002 786 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 NEK3P51956 506 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 RUNX3Q13761 415 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 GRM3Q14832 879 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 ZSCAN26Q16670 478 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 PPM1JQ5JR12 505 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 GRAMD4Q6IC98 578 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 CALML6Q8TD86 181 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 SRPK1Q96SB4 655 aaKnown RBP21.33■■□□□ 1.01
CLN3-209ENST00000561689 RHOJQ9H4E5 214 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 BPIFA1Q9NP55 256 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 FBXO6Q9NRD1 293 aaPredicted RBP21.33■■□□□ 1.01
CLN3-209ENST00000561689 NLE1Q9NVX2 485 aaPredicted RBP21.33■■□□□ 1.01
CLN3-209ENST00000561689 ELOVL2Q9NXB9 296 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 MARCH4Q9P2E8 410 aaPredicted RBP21.33■■□□□ 1.01
CLN3-209ENST00000561689 RIMKLBQ9ULI2 386 aa21.33■■□□□ 1.01
CLN3-209ENST00000561689 HAUS5O94927 633 aa21.32■■□□□ 1
CLN3-209ENST00000561689 ASMTLO95671 621 aa21.32■■□□□ 1
CLN3-209ENST00000561689 TOP3BO95985 862 aaKnown RBP21.32■■□□□ 1
CLN3-209ENST00000561689 LPOP22079 712 aaPredicted RBP21.32■■□□□ 1
CLN3-209ENST00000561689 TYK2P29597 1187 aa21.32■■□□□ 1
CLN3-209ENST00000561689 MTHFRP42898 656 aa21.32■■□□□ 1
CLN3-209ENST00000561689 PDE1CQ14123 709 aaPredicted RBP21.32■■□□□ 1
CLN3-209ENST00000561689 SEPT7Q16181 437 aaKnown RBP21.32■■□□□ 1
CLN3-209ENST00000561689 UGP2Q16851 508 aa21.32■■□□□ 1
CLN3-209ENST00000561689 LVRNQ6Q4G3 990 aa21.32■■□□□ 1
CLN3-209ENST00000561689 SFTPA1Q8IWL2 248 aa21.32■■□□□ 1
CLN3-209ENST00000561689 ZNF366Q8N895 744 aa21.32■■□□□ 1
CLN3-209ENST00000561689 ELSPBP1Q96BH3 223 aa21.32■■□□□ 1
CLN3-209ENST00000561689 CDKN2AIPNLQ96HQ2 116 aa21.32■■□□□ 1
CLN3-209ENST00000561689 FAM161BQ96MY7 647 aa21.32■■□□□ 1
CLN3-209ENST00000561689 TUBGCP5Q96RT8 1024 aa21.32■■□□□ 1
CLN3-209ENST00000561689 SNX15Q9NRS6 342 aa21.32■■□□□ 1
CLN3-209ENST00000561689 POLR3BQ9NW08 1133 aaPredicted RBP21.32■■□□□ 1
CLN3-209ENST00000561689 GRID1Q9ULK0 1009 aa21.32■■□□□ 1
CLN3-209ENST00000561689 UGT2B4P06133 528 aa21.32■■□□□ 1
CLN3-209ENST00000561689 SAT1P21673 171 aa21.32■■□□□ 1
CLN3-209ENST00000561689 GDI1P31150 447 aa21.32■■□□□ 1
CLN3-209ENST00000561689 GMPRP36959 345 aa21.32■■□□□ 1
CLN3-209ENST00000561689 RECQLP46063 649 aaPredicted RBP21.32■■□□□ 1
CLN3-209ENST00000561689 RPL26P61254 145 aaKnown RBP21.32■■□□□ 1
CLN3-209ENST00000561689 ZNF789Q5FWF6 425 aa21.32■■□□□ 1
CLN3-209ENST00000561689 CILP2Q8IUL8 1156 aa21.32■■□□□ 1
CLN3-209ENST00000561689 TTC30BQ8N4P2 665 aa21.32■■□□□ 1
CLN3-209ENST00000561689 CPA6Q8N4T0 437 aa21.32■■□□□ 1
CLN3-209ENST00000561689 GRIN3AQ8TCU5 1115 aa21.32■■□□□ 1
CLN3-209ENST00000561689 EPN3Q9H201 632 aa21.32■■□□□ 1
CLN3-209ENST00000561689 SUV39H2Q9H5I1 410 aa21.32■■□□□ 1
CLN3-209ENST00000561689 MAGEE1Q9HCI5 957 aa21.32■■□□□ 1
CLN3-209ENST00000561689 SLC39A10Q9ULF5 831 aa21.32■■□□□ 1
CLN3-209ENST00000561689 RPL26L1Q9UNX3 145 aaKnown RBP21.32■■□□□ 1
CLN3-209ENST00000561689 FNDC3AQ9Y2H6 1198 aaKnown RBP21.32■■□□□ 1
CLN3-209ENST00000561689 ZNF711Q9Y462 761 aa21.32■■□□□ 1
CLN3-209ENST00000561689 A0A0J9YYE9 177 aa21.31■■□□□ 1
CLN3-209ENST00000561689 TM9SF1O15321 606 aa21.31■■□□□ 1
CLN3-209ENST00000561689 TRBC1P01850 177 aa21.31■■□□□ 1
CLN3-209ENST00000561689 RAD51Q06609 339 aa21.31■■□□□ 1
CLN3-209ENST00000561689 HHATQ5VTY9 493 aa21.31■■□□□ 1
CLN3-209ENST00000561689 FOXR1Q6PIV2 292 aa21.31■■□□□ 1
CLN3-209ENST00000561689 LYSMD3Q7Z3D4 306 aa21.31■■□□□ 1
CLN3-209ENST00000561689 FAM111AQ96PZ2 611 aa21.31■■□□□ 1
CLN3-209ENST00000561689 GPR22Q99680 433 aa21.31■■□□□ 1
CLN3-209ENST00000561689 CPEB1Q9BZB8 566 aaKnown RBP21.31■■□□□ 1
CLN3-209ENST00000561689 IQCGQ9H095 443 aaKnown RBP21.31■■□□□ 1
CLN3-209ENST00000561689 FAM107BQ9H098 131 aa21.31■■□□□ 1
CLN3-209ENST00000561689 HACD3Q9P035 362 aa21.31■■□□□ 1
CLN3-209ENST00000561689 PLA2G4CQ9UP65 541 aa21.31■■□□□ 1
CLN3-209ENST00000561689 DOCK8Q8NF50 2099 aa21.31■■□□□ 1
CLN3-209ENST00000561689 GMNCA6NCL1 334 aa21.3■■□□□ 1
CLN3-209ENST00000561689 A8MX80 341 aa21.3■■□□□ 1
CLN3-209ENST00000561689 ASLP04424 464 aa21.3■■□□□ 1
CLN3-209ENST00000561689 SRPRAP08240 638 aaKnown RBP21.3■■□□□ 1
CLN3-209ENST00000561689 PRSS56P0CW18 603 aa21.3■■□□□ 1
CLN3-209ENST00000561689 GJA4P35212 333 aa21.3■■□□□ 1
CLN3-209ENST00000561689 HNF1BP35680 557 aa21.3■■□□□ 1
CLN3-209ENST00000561689 CD151P48509 253 aa21.3■■□□□ 1
CLN3-209ENST00000561689 SERPINB8P50452 374 aa21.3■■□□□ 1
CLN3-209ENST00000561689 PGGT1BP53609 377 aa21.3■■□□□ 1
CLN3-209ENST00000561689 SEMG2Q02383 582 aa21.3■■□□□ 1
CLN3-209ENST00000561689 CNSTQ6PJW8 725 aa21.3■■□□□ 1
CLN3-209ENST00000561689 KIAA0408Q6ZU52 694 aa21.3■■□□□ 1
CLN3-209ENST00000561689 SMRP1Q8NCR6 262 aa21.3■■□□□ 1
CLN3-209ENST00000561689 OR4L1Q8NH43 312 aa21.3■■□□□ 1
CLN3-209ENST00000561689 ACMSDQ8TDX5 336 aa21.3■■□□□ 1
CLN3-209ENST00000561689 SPOCK2Q92563 424 aa21.3■■□□□ 1
CLN3-209ENST00000561689 EID2BQ96D98 161 aa21.3■■□□□ 1
CLN3-209ENST00000561689 GPR63Q9BZJ6 419 aa21.3■■□□□ 1
CLN3-209ENST00000561689 SLC8A2Q9UPR5 921 aa21.3■■□□□ 1
CLN3-209ENST00000561689 STX7O15400 261 aaKnown RBP21.3■■□□□ 1
CLN3-209ENST00000561689 CD3EAPO15446 510 aaKnown RBP21.3■■□□□ 1
CLN3-209ENST00000561689 CCT5P48643 541 aa21.3■■□□□ 1
CLN3-209ENST00000561689 IL9RQ01113 521 aa21.3■■□□□ 1
CLN3-209ENST00000561689 GABPB2Q8TAK5 448 aaPredicted RBP21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms