RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 A0A087X1B8 175 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.65□□□□□ -0.71
CUX1-217ENST00000558836 CFLARO15519 480 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 HOXA2O43364 376 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 CIB2O75838 187 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 SIX3O95343 332 aaPredicted RBP10.65□□□□□ -0.71
CUX1-217ENST00000558836 MZF1P28698 734 aaPredicted RBP10.65□□□□□ -0.71
CUX1-217ENST00000558836 FMO4P31512 558 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 ALDH1A3P47895 512 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 TWF1Q12792 350 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 ZNF177Q13360 481 aaPredicted RBP10.65□□□□□ -0.71
CUX1-217ENST00000558836 NAA25Q14CX7 972 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 TBCCQ15814 346 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 PPP1R3AQ16821 1122 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 LRRC36Q1X8D7 754 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 DNAL1Q4LDG9 190 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 AGAP9Q5VTM2 703 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 KIAA0408Q6ZU52 694 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 CARNMT1Q8N4J0 409 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 RDH11Q8TC12 318 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 TADA1Q96BN2 335 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 TMEM175Q9BSA9 504 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 TTLL2Q9BWV7 592 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 NMRK1Q9NWW6 199 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 MID2Q9UJV3 735 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 SORCS3Q9UPU3 1222 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 ATP11BQ9Y2G3 1177 aa10.65□□□□□ -0.71
CUX1-217ENST00000558836 SUPT7LO94864 414 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 C1RP00736 705 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 ATP5F1P24539 256 aaPredicted RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 PIK3R1P27986 724 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 NUDT2P50583 147 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 CLCN5P51795 746 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 C1QTNF8P60827 252 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 DEFB103AP81534 67 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 TIAL1Q01085 375 aaKnown RBP eCLIP10.64□□□□□ -0.71
CUX1-217ENST00000558836 ASPHQ12797 758 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 MUM1Q2TAK8 710 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 ISCA2Q86U28 154 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 OR4L1Q8NH43 312 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 CDKN2AIPNLQ96HQ2 116 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 UBXN10Q96LJ8 280 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 RANBP9Q96S59 729 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 MYCBPQ99417 103 aaPredicted RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 PPM1HQ9ULR3 514 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 CDYLQ9Y232 598 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 K7ERQ8 282 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 UBFD1O14562 309 aaKnown RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 IPO13O94829 963 aaKnown RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 MBL2P11226 248 aaPredicted RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 GJA1P17302 382 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 CLNS1AP54105 237 aaKnown RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 CDH4P55283 916 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 TBL3Q12788 808 aaKnown RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 CYTH1Q15438 398 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 TSNAXIP1Q2TAA8 658 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 GLT6D1Q7Z4J2 308 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 DNAJB7Q7Z6W7 309 aaPredicted RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.64□□□□□ -0.716e-7■■■■■ 139.2
CUX1-217ENST00000558836 ARL14EPQ8N8R7 260 aaPredicted RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 BRSK1Q8TDC3 778 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 VWCEQ96DN2 955 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 NAF1Q96HR8 494 aaKnown RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 FEM1CQ96JP0 617 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 MAGEH1Q9H213 219 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 SCUBE2Q9NQ36 999 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 CATSPERZQ9NTU4 200 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 GALPQ9UBC7 116 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 FCF1Q9Y324 198 aaKnown RBP10.64□□□□□ -0.71
CUX1-217ENST00000558836 YIPF1Q9Y548 306 aa10.64□□□□□ -0.71
CUX1-217ENST00000558836 NCF1BA6NI72 391 aaPredicted RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 NCF1CA8MVU1 366 aaPredicted RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 H0Y626 953 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 H3BMM5 538 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 STX16-NPEPL1H3BU86 382 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 INSIG1O15503 277 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 OR1I1O60431 355 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 H2AFYO75367 372 aaKnown RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 PAPSS2O95340 614 aaPredicted RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 PRLP01236 227 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 FGF1P05230 155 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 NCF1P14598 390 aaPredicted RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 KPNA1P52294 538 aaPredicted RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 ACTR3P61158 418 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 SMAD3P84022 425 aaKnown RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 ARF5P84085 180 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 SLC34A1Q06495 639 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 SULT2A1Q06520 285 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 SMARCB1Q12824 385 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 ADGRF1Q5T601 910 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 ATXN7L2Q5T6C5 722 aaPredicted RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 KLC3Q6P597 504 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 ACAD11Q709F0 780 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 WFDC5Q8TCV5 224 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 SLC26A7Q8TE54 656 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 SCG3Q8WXD2 468 aaKnown RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 USP13Q92995 863 aaPredicted RBP10.63□□□□□ -0.71
CUX1-217ENST00000558836 TMEM169Q96HH4 297 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 PSKH2Q96QS6 385 aa10.63□□□□□ -0.71
CUX1-217ENST00000558836 MGME1Q9BQP7 344 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms