RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 PPCSQ9HAB8 311 aa16.91■□□□□ 0.3
SNX1-203ENST00000558040 ZFYVE1Q9HBF4 777 aa16.91■□□□□ 0.3
SNX1-203ENST00000558040 TREX1Q9NSU2 369 aa16.91■□□□□ 0.3
SNX1-203ENST00000558040 ZNF446Q9NWS9 450 aa16.91■□□□□ 0.3
SNX1-203ENST00000558040 PKP3Q9Y446 797 aa16.91■□□□□ 0.3
SNX1-203ENST00000558040 ARL5AQ9Y689 179 aa16.91■□□□□ 0.3
SNX1-203ENST00000558040 ZCWPW2A0A1B0GU75 182 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 EXOC1LA0A1B0GW35 172 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 A0A1W2PQF6 199 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 CCDC78A2IDD5 438 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 NPIPB15A6NHN6 443 aaPredicted RBP16.9■□□□□ 0.3
SNX1-203ENST00000558040 MAP2K7O14733 419 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 ATG13O75143 517 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 ALDH1A2O94788 518 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 SLC4A1P02730 911 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 ZNF30P17039 623 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 TARSP26639 723 aaKnown RBP16.9■□□□□ 0.3
SNX1-203ENST00000558040 VIPR1P32241 457 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 HADHAP40939 763 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 ZNF140P52738 457 aaPredicted RBP16.9■□□□□ 0.3
SNX1-203ENST00000558040 FAM193AP78312 1265 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 ELP6Q0PNE2 266 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 ARHGEF7Q14155 803 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 UBAP2Q5T6F2 1119 aaKnown RBP16.9■□□□□ 0.3
SNX1-203ENST00000558040 PDPK2PQ6A1A2 396 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 KIAA0930Q6ICG6 404 aaPredicted RBP16.9■□□□□ 0.3
SNX1-203ENST00000558040 ERN2Q76MJ5 926 aaKnown RBP16.9■□□□□ 0.3
SNX1-203ENST00000558040 LYSMD3Q7Z3D4 306 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 CROCCP2Q86T23 111 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 ZNF687Q8N1G0 1237 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 TTC30BQ8N4P2 665 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 RAB7BQ96AH8 199 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 ARRDC3Q96B67 414 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 CERS2Q96G23 380 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 FCRL3Q96P31 734 aaPredicted RBP16.9■□□□□ 0.3
SNX1-203ENST00000558040 ZIM3Q96PE6 472 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 HDAC8Q9BY41 377 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 LMAN1LQ9HAT1 526 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 PLAC1Q9HBJ0 212 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 PCDH12Q9NPG4 1184 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 PPANQ9NQ55 473 aaKnown RBP16.9■□□□□ 0.3
SNX1-203ENST00000558040 NLE1Q9NVX2 485 aaPredicted RBP16.9■□□□□ 0.3
SNX1-203ENST00000558040 MOCS1Q9NZB8 636 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 MUTYHQ9UIF7 546 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 RABGEF1Q9UJ41 708 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 SCML1Q9UN30 329 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 F5P12259 2224 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 MYLKQ15746 1914 aa16.9■□□□□ 0.3
SNX1-203ENST00000558040 FAM170BA6NMN3 283 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 CHURC1-FNTBB4DL54 471 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 STX7O15400 261 aaKnown RBP16.89■□□□□ 0.29
SNX1-203ENST00000558040 RPP40O75818 363 aaKnown RBP16.89■□□□□ 0.29
SNX1-203ENST00000558040 DNTTP04053 509 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 ADRB3P13945 408 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 HMGCLP35914 325 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 COPAP53621 1224 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 RPS14P62263 151 aaKnown RBP16.89■□□□□ 0.29
SNX1-203ENST00000558040 PRAMEP78395 509 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 ACVR1Q04771 509 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 ZBTB16Q05516 673 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 MGAT5Q09328 741 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 SFSWAPQ12872 951 aaKnown RBP16.89■□□□□ 0.29
SNX1-203ENST00000558040 NAB1Q13506 487 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 CNGA3Q16281 694 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 KIAA1211LQ6NV74 962 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 ESRP1Q6NXG1 681 aaKnown RBP16.89■□□□□ 0.29
SNX1-203ENST00000558040 CRTC1Q6UUV9 634 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 DPPA4Q7L190 304 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 KCNMB4Q86W47 210 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 PBXIP1Q96AQ6 731 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 ERLEC1Q96DZ1 483 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 PKNOX2Q96KN3 472 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 ZNF778Q96MU6 729 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 SMIM14Q96QK8 99 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 OSBPL6Q9BZF3 934 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 TBC1D17Q9HA65 648 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 POLMQ9NP87 494 aaPredicted RBP16.89■□□□□ 0.29
SNX1-203ENST00000558040 C20orf96Q9NUD7 363 aaPredicted RBP16.89■□□□□ 0.29
SNX1-203ENST00000558040 POLR3BQ9NW08 1133 aaPredicted RBP16.89■□□□□ 0.29
SNX1-203ENST00000558040 B4GALT6Q9UBX8 382 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 FETUBQ9UGM5 382 aa16.89■□□□□ 0.29
SNX1-203ENST00000558040 EYSQ5T1H1 3165 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 AURKAO14965 403 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 MID1O15344 667 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 SLC7A4O43246 635 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 SHBGP04278 402 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 COL9A1P20849 921 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 PSMA3P25788 255 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 THOC5Q13769 683 aaKnown RBP16.88■□□□□ 0.29
SNX1-203ENST00000558040 KBTBD12Q3ZCT8 623 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 TTC31Q49AM3 519 aaPredicted RBP16.88■□□□□ 0.29
SNX1-203ENST00000558040 LRRC73Q5JTD7 316 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 LRRC66Q68CR7 880 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 TRMT10BQ6PF06 316 aaKnown RBP16.88■□□□□ 0.29
SNX1-203ENST00000558040 RASSF3Q86WH2 238 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 TMPRSS6Q8IU80 811 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 OR4K2Q8NGD2 314 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 OR13J1Q8NGT2 312 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 OR2W6PQ8NHA6 318 aa16.88■□□□□ 0.29
SNX1-203ENST00000558040 CALML6Q8TD86 181 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms