RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ADCY4Q8NFM4 1077 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 GMIPQ9P107 970 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 PRG3Q9Y2Y8 225 aaPredicted RBP12.92□□□□□ -0.34
LDLR-207ENST00000558013 DNAJC15Q9Y5T4 150 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 FAM149AA5PLN7 773 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 M0QZQ0 153 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 UBXN8O00124 270 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 KIF3CO14782 793 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 TRIM24O15164 1050 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 SLC22A2O15244 555 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 CYP11A1P05108 521 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 ADSLP30566 484 aaPredicted RBP12.92□□□□□ -0.34
LDLR-207ENST00000558013 HK2P52789 917 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 YWHAHQ04917 246 aaPredicted RBP12.92□□□□□ -0.34
LDLR-207ENST00000558013 BIRC2Q13490 618 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 CAPRIN1Q14444 709 aaKnown RBP12.92□□□□□ -0.34
LDLR-207ENST00000558013 RFTN1Q14699 578 aaPredicted RBP12.92□□□□□ -0.34
LDLR-207ENST00000558013 VPS26BQ4G0F5 336 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 HMBOX1Q6NT76 420 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 HERC6Q8IVU3 1022 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 MPP4Q96JB8 637 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 CYP2S1Q96SQ9 504 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 UNC93B1Q9H1C4 597 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 AKTIPQ9H8T0 292 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 RGS18Q9NS28 235 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 EGFL7Q9UHF1 273 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 NOD1Q9Y239 953 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 BTRCQ9Y297 605 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 LDB2O43679 373 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 AP1G1O43747 822 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 SNRPB2P08579 225 aaKnown RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 PCSK6P29122 969 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 CYP2C18P33260 490 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 APLP1P51693 650 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 LSAMPQ13449 338 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 PTPRRQ15256 657 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 OR4D1Q15615 310 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 PFKFB4Q16877 469 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 GEN1Q17RS7 908 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 UGT3A2Q3SY77 523 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 ZNF678Q5SXM1 525 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 TIGD7Q6NT04 549 aaPredicted RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 FBXL22Q6P050 247 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 KLHDC10Q6PID8 442 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 LARP4Q71RC2 724 aaKnown RBP eCLIP12.91□□□□□ -0.343e-8■■□□□ 12.3
LDLR-207ENST00000558013 SERINC5Q86VE9 423 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 LCA5Q86VQ0 697 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 CFAP52Q8N1V2 620 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 ARRDC2Q8TBH0 407 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 DIS3LQ8TF46 1054 aaKnown RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 ATP13A1Q9HD20 1204 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 TBC1D13Q9NVG8 400 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 RAB26Q9ULW5 256 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 HEMK1Q9Y5R4 338 aaPredicted RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 TPST1O60507 370 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 RTN3O95197 1032 aaPredicted RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 CES1P23141 567 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 ARPP19P56211 112 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 TUSC3Q13454 348 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 MRPL10Q7Z7H8 261 aaKnown RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 ZNF683Q8IZ20 524 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 ARHGAP18Q8N392 663 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 PTGR2Q8N8N7 351 aaPredicted RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 PTCD2Q8WV60 388 aaKnown RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 CANT1Q8WVQ1 401 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 ESAMQ96AP7 390 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 TMIGD2Q96BF3 282 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 SP110Q9HB58 689 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 MRM3Q9HC36 420 aaKnown RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 VPS45Q9NRW7 570 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 IKZF3Q9UKT9 509 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 FNDC3AQ9Y2H6 1198 aaKnown RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 A0A0U1RQF3 1178 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 H3BSA7 217 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 NR5A2O00482 541 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 GPR182O15218 404 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 NRP2O60462 931 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 ATXN1LP0C7T5 689 aaKnown RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 IMPDH1P20839 514 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 GRIA3P42263 894 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 RPL5P46777 297 aaKnown RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 RENBPP51606 427 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 MGAT3Q09327 533 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 LPIN1Q14693 890 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 ACAP2Q15057 778 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 KLC3Q6P597 504 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 DCBLD1Q8N8Z6 715 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 PPWD1Q96BP3 646 aaKnown RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 NSMCE3Q96MG7 304 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 PHF12Q96QT6 1004 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 SEMA3CQ99985 751 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 PRKD2Q9BZL6 878 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 ARNT2Q9HBZ2 717 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 SPAG4Q9NPE6 437 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 TRMT13Q9NUP7 481 aaKnown RBP12.91□□□□□ -0.34
LDLR-207ENST00000558013 EPS15L1Q9UBC2 864 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 SLC27A5Q9Y2P5 690 aa12.91□□□□□ -0.34
LDLR-207ENST00000558013 MROH6A6NGR9 719 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 CAPN15O75808 1086 aa12.9□□□□□ -0.34
LDLR-207ENST00000558013 ZNF189O75820 626 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms