RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 HEATR3Q7Z4Q2 680 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 SLC4A9Q96Q91 983 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 PCDHAC1Q9H158 963 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 PCDH9Q9HC56 1237 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 ADA2Q9NZK5 511 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 TANC1Q9C0D5 1861 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 CYP3A7-CYP3A51PA0A087WV96 503 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 AGAP5A6NIR3 686 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 NRP1O14786 923 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 TADA2AO75478 443 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 STAU1O95793 577 aaKnown RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 GSRP00390 522 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 PROS1P07225 676 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 CYP2C8P10632 490 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 CYP3A7P24462 503 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 ELK4P28324 431 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 GTF2E2P29084 291 aaKnown RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 GABRB2P47870 512 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 ARPP19P56211 112 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 GSTO1P78417 241 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 ADARB1P78563 741 aaKnown RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 TNK1Q13470 666 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 KCNJ11Q14654 390 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 ZNF124Q15973 351 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 PSMD5Q16401 504 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 RBM48Q5RL73 367 aaKnown RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 TYW3Q6IPR3 259 aaKnown RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 RETSATQ6NUM9 610 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 RASGRP3Q8IV61 690 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 SLC22A15Q8IZD6 547 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 NLGN4XQ8N0W4 816 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 VTI1AQ96AJ9 217 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 ACO2Q99798 780 aaKnown RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 CDADC1Q9BWV3 514 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 DGCR6LQ9BY27 220 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 REXO4Q9GZR2 422 aaKnown RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 COG4Q9H9E3 785 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 RANGRFQ9HD47 186 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 SMPD3Q9NY59 655 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 SFMBT1Q9UHJ3 866 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 TINAGQ9UJW2 476 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 GMPPBQ9Y5P6 360 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 MINDY4BA8MYZ0 360 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 F8W036 122 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 ADORA2AP29274 412 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 GARSP41250 739 aaKnown RBP13.85□□□□□ -0.19
SHMT2-226ENST00000556825 MYL6P60660 151 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 RELQ04864 619 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-226ENST00000556825 STARD3Q14849 445 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 GPAT3Q53EU6 434 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 PRR16Q569H4 304 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 BRDTQ58F21 947 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-226ENST00000556825 COLEC12Q5KU26 742 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 VARS2Q5ST30 1063 aaKnown RBP13.85□□□□□ -0.19
SHMT2-226ENST00000556825 STXBP5Q5T5C0 1151 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 LCORLQ8N3X6 602 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 NAT8LQ8N9F0 302 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 AKAP1Q92667 903 aaKnown RBP eCLIP13.85□□□□□ -0.19
SHMT2-226ENST00000556825 PDXPQ96GD0 296 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 AHCYL2Q96HN2 611 aaKnown RBP13.85□□□□□ -0.19
SHMT2-226ENST00000556825 TBATAQ96M53 351 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 SLC6A15Q9H2J7 730 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 MBD2Q9UBB5 411 aa13.85□□□□□ -0.19
SHMT2-226ENST00000556825 TLR3O15455 904 aaKnown RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 ZNF45Q02386 682 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 CHRNDQ07001 517 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 SEMA3BQ13214 749 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 LTB4RQ15722 352 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 CALCRLQ16602 461 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 ECM1Q16610 540 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 SLC9B1Q4ZJI4 515 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 ANKRD22Q5VYY1 191 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 RANBP10Q6VN20 620 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 ANKS3Q6ZW76 656 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 OR8K5Q8NH50 307 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 MCOLN3Q8TDD5 553 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 SLC7A6Q92536 515 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 DHX38Q92620 1227 aaKnown RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 UFD1Q92890 307 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 PTP4A1Q93096 173 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 FYTTD1Q96QD9 318 aaKnown RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 TOR3AQ9H497 397 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 MRM3Q9HC36 420 aaKnown RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 PNPLA8Q9NP80 782 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 ANAPC7Q9UJX3 599 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 PCDHB13Q9Y5F0 798 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 SPATA31A6Q5VVP1 1343 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 AXIN1O15169 862 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 NR3C2P08235 984 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 TRIM49P0CI25 452 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 TRIM49CP0CI26 452 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 SELLP14151 372 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 RAB3AP20336 220 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 CRHBPP24387 322 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 RAP1GAPP47736 663 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 GP2P55259 537 aaKnown RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 RPL10AP62906 217 aaKnown RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 EFR3AQ14156 821 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 ALKBH2Q6NS38 261 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms