RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 RCAN1P53805 252 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 CDH15P55291 814 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 NANOS3P60323 173 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 KLRC3Q07444 240 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 DPTQ07507 201 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 EIF2B5Q13144 721 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 DYRK1AQ13627 763 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 TUBA3CQ13748 450 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 LY6KQ17RY6 165 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 TEDDM1Q5T9Z0 273 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 LRCH2Q5VUJ6 765 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 DENND2CQ68D51 928 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 GPR139Q6DWJ6 353 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 DENND1BQ6P3S1 775 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 TUBA3EQ6PEY2 450 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 PIK3AP1Q6ZUJ8 805 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 IKBIPQ70UQ0 350 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 RASGRP2Q7LDG7 609 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 GPRIN1Q7Z2K8 1008 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 ADGRG5Q8IZF4 528 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 SLC44A3Q8N4M1 653 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 ZNF366Q8N895 744 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 PTGR2Q8N8N7 351 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 TDRD5Q8NAT2 981 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 ZBTB44Q8NCP5 570 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 MDGA1Q8NFP4 955 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 TNIP2Q8NFZ5 429 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 XAGE5Q8WWM1 108 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 SMARCE1Q969G3 411 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 ARRDC3Q96B67 414 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 MIEF2Q96C03 454 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 LRIG1Q96JA1 1093 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 FEM1CQ96JP0 617 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 WDR24Q96S15 920 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 DCLRE1CQ96SD1 692 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 BAG1Q99933 345 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 FUZQ9BT04 418 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 SCNM1Q9BWG6 230 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 ACTRT3Q9BYD9 372 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 AGO3Q9H9G7 860 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 PDE11AQ9HCR9 933 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 RNF146Q9NTX7 359 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 SEPT11Q9NVA2 429 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 MCM9Q9NXL9 1143 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 CYP39A1Q9NYL5 469 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 NFKBIL1Q9UBC1 381 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 WNT16Q9UBV4 365 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 LIMA1Q9UHB6 759 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 CHORDC1Q9UHD1 332 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 SLC25A13Q9UJS0 675 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 RIMKLBQ9ULI2 386 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 DUSP12Q9UNI6 340 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 SLC12A4Q9UP95 1085 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 SNX8Q9Y5X2 465 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 LYVE1Q9Y5Y7 322 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 ANKRD17O75179 2603 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 PLXNA4Q9HCM2 1894 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 MYO5AQ9Y4I1 1855 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 DOCK8Q8NF50 2099 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 ABCA12Q86UK0 2595 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 SH2D7A6NKC9 451 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 TTC36A6NLP5 189 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 ATP2A1O14983 1001 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 CTIFO43310 598 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 PRKAB2O43741 272 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 N4BP1O75113 896 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 URI1O94763 535 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 NDUFB10O96000 172 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 ALDOAP04075 364 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 CLEC3BP05452 202 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 ADH4P08319 380 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 ZNF286BP0CG31 522 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 UBL4AP11441 157 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 CXCR5P32302 372 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 CTNNA1P35221 906 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 HOXD13P35453 343 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 RPS3AP61247 264 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 TXNL4AP83876 142 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 TIAL1Q01085 375 aaKnown RBP eCLIP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 SRSF1Q07955 248 aaKnown RBP eCLIP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 THOC5Q13769 683 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 BAATQ14032 418 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 MVPQ14764 893 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 CSRP2Q16527 193 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 TMEM266Q2M3C6 531 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 KRTAP15-1Q3LI76 137 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 SNX30Q5VWJ9 437 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 SLC9A4Q6AI14 798 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 CES5AQ6NT32 575 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 WDR93Q6P2C0 686 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 TMEM154Q6P9G4 183 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 PXKQ7Z7A4 578 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 CAND1Q86VP6 1230 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 LDLRAD3Q86YD5 345 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 TTC39CQ8N584 583 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 RFWD2Q8NHY2 731 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 SCFD2Q8WU76 684 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 SDR42E1Q8WUS8 393 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 ATG4AQ8WYN0 398 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 POMGNT1Q8WZA1 660 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms