RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 NECAB2Q7Z6G3 386 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 FAM72BQ86X60 149 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 STK40Q8N2I9 435 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 FBXO30Q8TB52 745 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 SELENOMQ8WWX9 145 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 LZICQ8WZA0 190 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 EVLQ9UI08 416 aaPredicted RBP16.32■□□□□ 0.2
CUX1-213ENST00000549414 ZFP37Q9Y6Q3 630 aaPredicted RBP16.32■□□□□ 0.2
CUX1-213ENST00000549414 DDX60Q8IY21 1712 aaKnown RBP16.32■□□□□ 0.2
CUX1-213ENST00000549414 CLOCKO15516 846 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 RNASEH1O60930 286 aaKnown RBP16.32■□□□□ 0.2
CUX1-213ENST00000549414 HLA-DQB2P05538 268 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 SLC1A2P43004 574 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 GNA12Q03113 381 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 CLYBLQ8N0X4 340 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 NPY6RQ99463 290 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 GPR21Q99679 349 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 ZMYND8Q9ULU4 1186 aaPredicted RBP16.32■□□□□ 0.2
CUX1-213ENST00000549414 PIRO00625 290 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 XYLBO75191 536 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 RASSF9O75901 435 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 LDLRP01130 860 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 HNRNPDQ14103 355 aaKnown RBP16.31■□□□□ 0.2
CUX1-213ENST00000549414 SQLEQ14534 574 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 TMEM198Q66K66 360 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 ZFP1Q6P2D0 407 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 FAM156AQ8NDB6 213 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 SIGLEC10Q96LC7 697 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 ZNF556Q9HAH1 456 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 GKN1Q9NS71 199 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 SPG21Q9NZD8 308 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 MYH4Q9Y623 1939 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 A0A1B0GUL6 1792 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 COL16A1Q07092 1604 aaPredicted RBP16.31■□□□□ 0.2
CUX1-213ENST00000549414 NPEPPSL1A6NEC2 478 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 NDST3O95803 873 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 RPL38P63173 70 aaKnown RBP16.31■□□□□ 0.2
CUX1-213ENST00000549414 PPIDQ08752 370 aaKnown RBP16.31■□□□□ 0.2
CUX1-213ENST00000549414 ZBTB17Q13105 803 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 PWP1Q13610 501 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 USP45Q70EL2 814 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 CAND1Q86VP6 1230 aaKnown RBP16.31■□□□□ 0.2
CUX1-213ENST00000549414 TRAPPC5Q8IUR0 188 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 TNIP2Q8NFZ5 429 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 NTAN1Q96AB6 310 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 ASB2Q96Q27 587 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 PANX3Q96QZ0 392 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 CLDN11O75508 207 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 PRKCGP05129 697 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 DGKAP23743 735 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 HOXA11P31270 313 aaPredicted RBP16.31■□□□□ 0.2
CUX1-213ENST00000549414 MAPK10P53779 464 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 HJURPQ8NCD3 748 aaPredicted RBP16.31■□□□□ 0.2
CUX1-213ENST00000549414 ANKRD27Q96NW4 1050 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 STN1Q9H668 368 aaKnown RBP16.31■□□□□ 0.2
CUX1-213ENST00000549414 ATP13A3Q9H7F0 1226 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 SLC12A4Q9UP95 1085 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 WASF2Q9Y6W5 498 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 A0A0U1RQF3 1178 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 MGRN1O60291 552 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 TM7SF2O76062 418 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 CYP2A7P20853 494 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 PARP15Q460N3 678 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 TSTD2Q5T7W7 516 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 GPRIN3Q6ZVF9 776 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 TP53INP2Q8IXH6 220 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 RIN3Q8TB24 985 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 TMEM209Q96SK2 561 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 CAPN10Q9HC96 672 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 SLC2A6Q9UGQ3 507 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 ZNF711Q9Y462 761 aa16.31■□□□□ 0.2
CUX1-213ENST00000549414 ACSL4O60488 711 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 NTRK1P04629 796 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 PAX3P23760 479 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 POU1F1P28069 291 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 ALDH9A1P49189 494 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 CLDN10P78369 228 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 LSM12Q3MHD2 195 aaKnown RBP16.3■□□□□ 0.2
CUX1-213ENST00000549414 TRIM48Q8IWZ4 208 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 BBS2Q9BXC9 721 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 USP29Q9HBJ7 922 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 SPAG4Q9NPE6 437 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 ASAH2Q9NR71 780 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 CFAP97Q9P2B7 532 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 FETUBQ9UGM5 382 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 TDRKHQ9Y2W6 561 aaKnown RBP16.3■□□□□ 0.2
CUX1-213ENST00000549414 F8W810 466 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 J3KR12 359 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 ZBTB14O43829 449 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 RPP40O75818 363 aaKnown RBP16.3■□□□□ 0.2
CUX1-213ENST00000549414 CNMDO75829 334 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 CXCL14O95715 111 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 CCND3P30281 292 aaPredicted RBP16.3■□□□□ 0.2
CUX1-213ENST00000549414 GMPRP36959 345 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 IDH3AP50213 366 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 PGGT1BP53609 377 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 SNRPD1P62314 119 aaKnown RBP16.3■□□□□ 0.2
CUX1-213ENST00000549414 IRF8Q02556 426 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 SLC10A2Q12908 348 aaPredicted RBP16.3■□□□□ 0.2
CUX1-213ENST00000549414 RIPK1Q13546 671 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms