RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PANX3Q96QZ0 392 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 FNDC3AQ9Y2H6 1198 aaKnown RBP16.37■□□□□ 0.21
COL4A1-204ENST00000543140 A0A088AWK7 358 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 A0A0U1RQS6 177 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 ILVBLA1L0T0 632 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 A8MT66 165 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 C1RP00736 705 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 LMNAP02545 664 aaKnown RBP16.36■□□□□ 0.21
COL4A1-204ENST00000543140 MBL2P11226 248 aaPredicted RBP16.36■□□□□ 0.21
COL4A1-204ENST00000543140 COX4I1P13073 169 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 PMLP29590 882 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 EPHB1P54762 984 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 DEFB103AP81534 67 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 DSG1Q02413 1049 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 ACVR1Q04771 509 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 ASPHQ12797 758 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 CUL3Q13618 768 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 NAA25Q14CX7 972 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 VEPH1Q14D04 833 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 MRNIPQ6NTE8 343 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 EFCAB3Q8N7B9 438 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 EXT2Q93063 718 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 CDKN2AIPNLQ96HQ2 116 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 CEP295NLQ96MC4 621 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 ZNF558Q96NG5 402 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 LENG8Q96PV6 779 aaPredicted RBP16.36■□□□□ 0.21
COL4A1-204ENST00000543140 ZBED2Q9BTP6 218 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 CATSPERZQ9NTU4 200 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 SSX2IPQ9Y2D8 614 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 COL4A6Q14031 1691 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 PDE4DIPQ5VU43 2346 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 CIB2O75838 187 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 SORBS2O94875 1100 aaKnown RBP16.36■□□□□ 0.21
COL4A1-204ENST00000543140 MNX1P50219 401 aaPredicted RBP16.36■□□□□ 0.21
COL4A1-204ENST00000543140 SMAD3P84022 425 aaKnown RBP16.36■□□□□ 0.21
COL4A1-204ENST00000543140 PFKPQ01813 784 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 C1orf146Q5VVC0 180 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 METTL21CQ5VZV1 264 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 CXorf57Q6NSI4 855 aaKnown RBP16.36■□□□□ 0.21
COL4A1-204ENST00000543140 CNKSR3Q6P9H4 555 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 PIWIL4Q7Z3Z4 852 aaKnown RBP16.36■□□□□ 0.21
COL4A1-204ENST00000543140 TMEM150AQ86TG1 271 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 CARNMT1Q8N4J0 409 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 KDM1BQ8NB78 822 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 LPCAT1Q8NF37 534 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 OR4K2Q8NGD2 314 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 CFAP61Q8NHU2 1237 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 CATSPER2Q96P56 530 aa16.36■□□□□ 0.21
COL4A1-204ENST00000543140 TBX10O75333 385 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 SKAP2O75563 359 aaPredicted RBP16.35■□□□□ 0.21
COL4A1-204ENST00000543140 PDE5AO76074 875 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 IPO13O94829 963 aaKnown RBP16.35■□□□□ 0.21
COL4A1-204ENST00000543140 PARNO95453 639 aaKnown RBP16.35■□□□□ 0.21
COL4A1-204ENST00000543140 PRLP01236 227 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 ELF1P32519 619 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 CA8P35219 290 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 ARF5P84085 180 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 ACAP2Q15057 778 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 SLC14A2Q15849 920 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 PPM1LQ5SGD2 360 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 TPGS2Q68CL5 300 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 ACAD11Q709F0 780 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 GLT6D1Q7Z4J2 308 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 GALNT7Q86SF2 657 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 SLC39A11Q8N1S5 342 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 MDGA1Q8NFP4 955 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 TOP1MTQ969P6 601 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 ZNF570Q96NI8 536 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 TNFRSF12AQ9NP84 129 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 TMEM39AQ9NV64 488 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 CDYLQ9Y232 598 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 UBA6A0AVT1 1052 aaPredicted RBP16.35■□□□□ 0.21
COL4A1-204ENST00000543140 NPHS1O60500 1241 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 TBL1XO60907 577 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 RBP1P09455 135 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 TSPAN8P19075 237 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 CR2P20023 1033 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 MZF1P28698 734 aaPredicted RBP16.35■□□□□ 0.21
COL4A1-204ENST00000543140 TIAL1Q01085 375 aaKnown RBP eCLIP16.35■□□□□ 0.21
COL4A1-204ENST00000543140 BTG3Q14201 252 aaPredicted RBP16.35■□□□□ 0.21
COL4A1-204ENST00000543140 TXNDC8Q6A555 127 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 NET1Q7Z628 596 aaPredicted RBP16.35■□□□□ 0.21
COL4A1-204ENST00000543140 ISCA2Q86U28 154 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 DEFB107AQ8IZN7 70 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 ARL14EPQ8N8R7 260 aaPredicted RBP16.35■□□□□ 0.21
COL4A1-204ENST00000543140 VTI1BQ9UEU0 232 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 TBC1D30Q9Y2I9 924 aa16.35■□□□□ 0.21
COL4A1-204ENST00000543140 H0Y626 953 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 CRTAMO95727 393 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 ARSAP15289 507 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 ABL2P42684 1182 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 DNAJB13P59910 316 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 ZXDBP98169 803 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 LAMB3Q13751 1172 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 FAM45BPQ6NSW5 357 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 TLDC1Q6P9B6 456 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 SETD3Q86TU7 594 aaPredicted RBP16.34■□□□□ 0.21
COL4A1-204ENST00000543140 LMNTD2Q8IXW0 634 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 EFHBQ8N7U6 833 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 FAM45AQ8TCE6 357 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms