RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 PAF1Q8N7H5 531 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 RHBDD1Q8TEB9 315 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 TFB1MQ8WVM0 346 aaKnown RBP13.15□□□□□ -0.3
LTBR-208ENST00000541005 UBE2Q2Q8WVN8 375 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 ALG3Q92685 438 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 P3H4Q92791 437 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 TADA1Q96BN2 335 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 IMP4Q96G21 291 aaKnown RBP13.15□□□□□ -0.3
LTBR-208ENST00000541005 TBATAQ96M53 351 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 COQ10AQ96MF6 247 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 QKIQ96PU8 341 aaKnown RBP eCLIP13.15□□□□□ -0.3
LTBR-208ENST00000541005 LYSMD1Q96S90 227 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 TSGA10Q9BZW7 698 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 KCTD5Q9NXV2 234 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 SAE1Q9UBE0 346 aaPredicted RBP13.15□□□□□ -0.3
LTBR-208ENST00000541005 WASF3Q9UPY6 502 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 TTLL3Q9Y4R7 772 aa13.15□□□□□ -0.3
LTBR-208ENST00000541005 A0A0J9YYE9 177 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 CAPN8A6NHC0 703 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 HACD1B0YJ81 288 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 TNFSF14O43557 240 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 RECQL5O94762 991 aaPredicted RBP13.14□□□□□ -0.31
LTBR-208ENST00000541005 TRIM16O95361 564 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 TRBC1P01850 177 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 CSF2P04141 144 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 ITGAVP06756 1048 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 PDHA1P08559 390 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 PTPN3P26045 913 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 THOP1P52888 689 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 RWDD2BP57060 319 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 XRCC4Q13426 336 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 PTK2BQ14289 1009 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 TEX44Q53QW1 395 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 ESRP1Q6NXG1 681 aaKnown RBP13.14□□□□□ -0.31
LTBR-208ENST00000541005 KDM7AQ6ZMT4 941 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 PEX26Q7Z412 305 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 LRRC8AQ8IWT6 810 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 RAVER1Q8IY67 606 aaKnown RBP13.14□□□□□ -0.31
LTBR-208ENST00000541005 NDUFAF2Q8N183 169 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 HERPUD2Q9BSE4 406 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 OSBPL8Q9BZF1 889 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 SLC25A51Q9H1U9 297 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 TOR4AQ9NXH8 423 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 FTSJ1Q9UET6 329 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 AMFRQ9UKV5 643 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 DNPEPQ9ULA0 475 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 CAPN6Q9Y6Q1 641 aa13.14□□□□□ -0.31
LTBR-208ENST00000541005 H3BM21 787 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 HOXC4P09017 264 aaPredicted RBP13.13□□□□□ -0.31
LTBR-208ENST00000541005 FTH1P19P0C7X4 201 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 ZNF30P17039 623 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 DGKAP23743 735 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 TEAD1P28347 426 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 CD86P42081 329 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 KIAA1024LP59773 190 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 HNRNPKP61978 463 aaKnown RBP eCLIP13.13□□□□□ -0.31
LTBR-208ENST00000541005 WASHC5Q12768 1159 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 BNIP3Q12983 259 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 EIF2B5Q13144 721 aaKnown RBP13.13□□□□□ -0.31
LTBR-208ENST00000541005 NFATC4Q14934 902 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 NOMO1Q15155 1222 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 LLGL1Q15334 1064 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 SLC25A45Q8N413 288 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 DTD2Q96FN9 168 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 HES6Q96HZ4 224 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 TEKT5Q96M29 485 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 TRIB3Q96RU7 358 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 VAT1Q99536 393 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 GRPEL1Q9HAV7 217 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 PCDH9Q9HC56 1237 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 DNAJC28Q9NX36 388 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 APOBEC2Q9Y235 224 aaKnown RBP13.13□□□□□ -0.31
LTBR-208ENST00000541005 CHKBQ9Y259 395 aa13.13□□□□□ -0.31
LTBR-208ENST00000541005 IGF2RP11717 2491 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 DDX3YO15523 660 aaKnown RBP13.12□□□□□ -0.31
LTBR-208ENST00000541005 KRT86O43790 486 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 SDC3O75056 442 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 ALPIP09923 528 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 GIMD1P0DJR0 217 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 PYGMP11217 842 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 HNF1BP35680 557 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 TRIM23P36406 574 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 CETN2P41208 172 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 CCZ1BP86790 482 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 CCZ1P86791 482 aaPredicted RBP13.12□□□□□ -0.31
LTBR-208ENST00000541005 DPTQ07507 201 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 ZNF211Q13398 564 aaPredicted RBP13.12□□□□□ -0.31
LTBR-208ENST00000541005 ARHGEF7Q14155 803 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 INPP5AQ14642 412 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 ACOX1Q15067 660 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 LRRC66Q68CR7 880 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 HSD11B1LQ7Z5J1 315 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 RAB44Q7Z6P3 723 aaPredicted RBP13.12□□□□□ -0.31
LTBR-208ENST00000541005 TSPAN33Q86UF1 283 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.12□□□□□ -0.31
LTBR-208ENST00000541005 EID2Q8N6I1 236 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 UBL4BQ8N7F7 174 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 ZNF548Q8NEK5 533 aaPredicted RBP13.12□□□□□ -0.31
LTBR-208ENST00000541005 OR4C6Q8NH72 309 aa13.12□□□□□ -0.31
LTBR-208ENST00000541005 ACTL9Q8TC94 416 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms