RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 SPOCK2Q92563 424 aa16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 FUBP1Q96AE4 644 aaKnown RBP16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 ATXN7L3BQ96GX2 97 aa16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 LGMNQ99538 433 aa16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 MGME1Q9BQP7 344 aa16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 WDR26Q9H7D7 661 aa16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 NOD2Q9HC29 1040 aa16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 THSD1Q9NS62 852 aa16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 IFNKQ9P0W0 207 aa16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 RCOR3Q9P2K3 495 aaPredicted RBP16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 B4GALT6Q9UBX8 382 aa16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 PCDHGC4Q9Y5F7 938 aa16.24■□□□□ 0.19
CLSTN3-204ENST00000535313 FASNP49327 2511 aaKnown RBP16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 PTPRQQ9UMZ3 2332 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 PDE2AO00408 941 aaPredicted RBP16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 TNFRSF10CO14798 259 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 CPP00450 1065 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 TPM3P06753 285 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 HOXC4P09017 264 aaPredicted RBP16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 CR2P20023 1033 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 RBMS1P29558 406 aaKnown RBP16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 MMP13P45452 471 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 ERVPABLB-1P60509 514 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 COL9A2Q14055 689 aaPredicted RBP16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 SPIDRQ14159 915 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 C3orf38Q5JPI3 329 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 RALGPS1Q5JS13 557 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 PNCKQ6P2M8 343 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 LRRC49Q8IUZ0 686 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 PGBD5Q8N414 524 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 KYQ8NBH2 561 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 OR6C4Q8NGE1 309 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 OR1E3Q8WZA6 343 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 PDXPQ96GD0 296 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 NSMCE3Q96MG7 304 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 RBM15Q96T37 977 aaKnown RBP eCLIP16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 KCTD5Q9NXV2 234 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 PHTF1Q9UMS5 762 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 SATB2Q9UPW6 733 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 ENTPD2Q9Y5L3 495 aa16.23■□□□□ 0.19
CLSTN3-204ENST00000535313 TMEM202A6NGA9 273 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 GYPCP04921 128 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 CYP2A6P11509 494 aaPredicted RBP16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 PTMSP20962 102 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 VIPR1P32241 457 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 TRIM23P36406 574 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 MAXP61244 160 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 DENND2CQ68D51 928 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 NYAP1Q6ZVC0 841 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 TAF8Q7Z7C8 310 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 SPACA3Q8IXA5 215 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 ZNF564Q8TBZ8 553 aaPredicted RBP16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 CCDC74AQ96AQ1 378 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 NUS1Q96E22 293 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 NAF1Q96HR8 494 aaKnown RBP16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 HIC2Q96JB3 615 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 COQ10AQ96MF6 247 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 UBL7Q96S82 380 aaPredicted RBP16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 PRORYQ9H606 182 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 FGF22Q9HCT0 170 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 MOSPD1Q9UJG1 213 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 RAI2Q9Y5P3 530 aa16.22■□□□□ 0.19
CLSTN3-204ENST00000535313 HEXIM1O94992 359 aaKnown RBP16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 KRT10P13645 584 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 GM2AP17900 193 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 CASP14P31944 242 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 TLE3Q04726 772 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 TRAF2Q12933 501 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 MMRN1Q13201 1228 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 ARHGEF7Q14155 803 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 CNGA3Q16281 694 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 TSR1Q2NL82 804 aaKnown RBP16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 ARMC12Q5T9G4 340 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 BROXQ5VW32 411 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 NDUFAF2Q8N183 169 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 KCTD6Q8NC69 237 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 FAM46DQ8NEK8 389 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 FCRL3Q96P31 734 aaPredicted RBP16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 CYP4F12Q9HCS2 524 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 NT5MQ9NPB1 228 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 ASCL3Q9NQ33 180 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 MRPL40Q9NQ50 206 aaKnown RBP16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 PHPT1Q9NRX4 125 aaPredicted RBP16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 CTTNBP2NLQ9P2B4 639 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 PCDHGA8Q9Y5G5 932 aa16.21■□□□□ 0.19
CLSTN3-204ENST00000535313 BAHCC1Q9P281 2608 aa16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 PSMD11O00231 422 aa16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 NTN3O00634 580 aaPredicted RBP16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 PGLSO95336 258 aa16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 MYCLP1P12525 358 aaPredicted RBP16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 IL4RP24394 825 aa16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 GJC1P36383 396 aa16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 ITKQ08881 620 aa16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 KCTD16Q68DU8 428 aa16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 TIGD7Q6NT04 549 aaPredicted RBP16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 FOXR1Q6PIV2 292 aa16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 IGF2-ASQ6U949 168 aa16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 USP45Q70EL2 814 aa16.2■□□□□ 0.18
CLSTN3-204ENST00000535313 MAP7D3Q8IWC1 876 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms