RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 CD48P09326 243 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 GLI4P10075 376 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 KRT10P13645 584 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 FOSL2P15408 326 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 H2AFXP16104 143 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 KDELR1P24390 212 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 SDC4P31431 198 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CHKAP35790 457 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 PPM1AP35813 382 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 TSPAN7P41732 249 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CDKN2BP42772 138 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 GRK6P43250 576 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 KCNJ1P48048 391 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CCT5P48643 541 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 ALDH7A1P49419 539 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 PGFP49763 221 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 SULT1E1P49888 294 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 MAP2K6P52564 334 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 EPHB4P54760 987 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CDH6P55285 790 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 HDAC4P56524 1084 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 MRPS5P82675 430 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 SARNPP82979 210 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 ELAVL2Q12926 359 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 PPIGQ13427 754 aaKnown RBP eCLIP4.27□□□□□ -1.73
CD44-226ENST00000527889 IL10RAQ13651 578 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 PSMD5Q16401 504 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CPSF6Q16630 551 aaKnown RBP eCLIP4.27□□□□□ -1.73
CD44-226ENST00000527889 HADHQ16836 314 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 ST3GAL2Q16842 350 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 TTC31Q49AM3 519 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 DCAF6Q58WW2 860 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 ODF2Q5BJF6 829 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 RAB41Q5JT25 222 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 OTUD1Q5VV17 481 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 PRAMEF9Q5VWM5 478 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 SYPL2Q5VXT5 272 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 IZUMO3Q5VZ72 239 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 SCYL2Q6P3W7 929 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 TTC27Q6P3X3 843 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 TLDC1Q6P9B6 456 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 LVRNQ6Q4G3 990 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 SPOCD1Q6ZMY3 1216 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 C4orf50Q6ZRC1 276 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CYP4V2Q6ZWL3 525 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 BHLHA9Q7RTU4 235 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 MAATS1Q7Z4T9 603 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 SPATA2LQ8IUW3 424 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 DCP1BQ8IZD4 617 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 CCDC185Q8N715 623 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 PRELID2Q8N945 189 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 COLGALT1Q8NBJ5 622 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 KCTD6Q8NC69 237 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 OR14C36Q8NHC7 312 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 EXD1Q8NHP7 514 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 ZSCAN18Q8TBC5 510 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 C1orf54Q8WWF1 131 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CASKIN2Q8WXE0 1202 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 ATG4AQ8WYN0 398 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 SEC14L1Q92503 715 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 FATE1Q969F0 183 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 TOP1MTQ969P6 601 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 MAGOHBQ96A72 148 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 ZBTB9Q96C00 473 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 HAUS1Q96CS2 278 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 ZNF689Q96CS4 500 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 APIPQ96GX9 242 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 IGSF21Q96ID5 467 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 RMDN2Q96LZ7 410 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 ZNF558Q96NG5 402 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 SLITRK1Q96PX8 696 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 YME1L1Q96TA2 773 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 NAP1L3Q99457 506 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 TRIM51Q9BSJ1 452 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 TTPALQ9BTX7 342 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 HTATIP2Q9BUP3 242 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 DDX23Q9BUQ8 820 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 SNRNP25Q9BV90 132 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 MAGEB5Q9BZ81 275 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 OSBPL8Q9BZF1 889 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 DMAP1Q9NPF5 467 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.27□□□□□ -1.73
CD44-226ENST00000527889 CALCOCO1Q9P1Z2 691 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 RABL2AQ9UBK7 228 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 AMACRQ9UHK6 382 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 ACSL6Q9UKU0 697 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 USP18Q9UMW8 372 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CORO2BQ9UQ03 480 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 NAALADL1Q9UQQ1 740 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 R3HDM2Q9Y2K5 976 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.27□□□□□ -1.73
CD44-226ENST00000527889 RRP15Q9Y3B9 282 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 SIT1Q9Y3P8 196 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 SNX5Q9Y5X3 404 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CFAP20Q9Y6A4 193 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 CDY1Q9Y6F8 540 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 FAM208BQ5VWN6 2430 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CROCCQ5TZA2 2017 aa4.26□□□□□ -1.73
CD44-226ENST00000527889 TRIOO75962 3097 aa4.26□□□□□ -1.73
CD44-226ENST00000527889 GCN1Q92616 2671 aaKnown RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms