RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 FGF10O15520 208 aaPredicted RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 RASA4O43374 803 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 NRDCO43847 1150 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 RNGTTO60942 597 aaKnown RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 TBC1D3HP0C7X1 549 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 DESP17661 470 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 POLR2EP19388 210 aaKnown RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 C5AR1P21730 350 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 CD97P48960 835 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 VASPP50552 380 aaPredicted RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 YBEYP58557 167 aaPredicted RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 ARF5P84085 180 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 EIF3IQ13347 325 aaKnown RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 SLC12A1Q13621 1099 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 CDH18Q13634 790 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 PAFAH1B3Q15102 231 aaKnown RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 IFI16Q16666 785 aaKnown RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 FAM182AQ5T1J6 154 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 C9orf64Q5T6V5 341 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 TBC1D3GQ6DHY5 549 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 TBC1D3CQ6IPX1 549 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 ZCCHC8Q6NZY4 707 aaKnown RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 FOXR1Q6PIV2 292 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 ZNF783Q6ZMS7 281 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 PEX26Q7Z412 305 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 PTRH1Q86Y79 214 aaKnown RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 MMAAQ8IVH4 418 aaKnown RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 TBC1D3Q8IZP1 549 aaPredicted RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 EXD1Q8NHP7 514 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 LRRN4Q8WUT4 740 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 HMCESQ96FZ2 354 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 KLHDC7BQ96G42 594 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 CELF6Q96J87 481 aaKnown RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 MAGEH1Q9H213 219 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 MTG2Q9H4K7 406 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 CATSPERBQ9H7T0 1116 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 PDFQ9HBH1 243 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 DDX56Q9NY93 547 aaKnown RBP11.04□□□□□ -0.64
NEDD8-204ENST00000526430 ERVW-1Q9UQF0 538 aa11.04□□□□□ -0.64
NEDD8-204ENST00000526430 hCG_1818297A0A087WSY0 165 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 TCRBV7S2A1N4TA0A589 114 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 CCDC66A2RUB6 948 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 EME2A4GXA9 379 aaPredicted RBP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 J3KR12 359 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 K7ERQ8 282 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 K7ESM1 405 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 RNF103O00237 685 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 PLD2O14939 933 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 SLC7A4O43246 635 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 ZSCAN12O43309 604 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 SMAD6O43541 496 aaKnown RBP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 KDELR3O43731 214 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 ZRANB2O95218 330 aaKnown RBP eCLIP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 KRT1P04264 644 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 ASLP04424 464 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 RHOCP08134 193 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 POU3F2P20265 443 aaPredicted RBP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 DRD3P35462 400 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 ARL4AP40617 200 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 STK19P49842 368 aaPredicted RBP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 PAPOLAP51003 745 aaKnown RBP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 NDST2P52849 883 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 PDX1P52945 283 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 ST8SIA6P61647 398 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 GBE1Q04446 702 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 SRSF6Q13247 344 aaKnown RBP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 KRT81Q14533 505 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 TGIF1Q15583 401 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 SETMARQ53H47 684 aaPredicted RBP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 NPNTQ6UXI9 565 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 TICAM1Q8IUC6 712 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 SYCE1Q8N0S2 351 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 ZNF557Q8N988 423 aaPredicted RBP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 TMEM145Q8NBT3 493 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 FRS2Q8WU20 508 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 HTR3CQ8WXA8 447 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 RPL10LQ96L21 214 aaKnown RBP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 NSMCE3Q96MG7 304 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 WDR24Q96S15 920 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 FAM129BQ96TA1 746 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 CALN1Q9BXU9 219 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 SEPT10Q9P0V9 454 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 SAE1Q9UBE0 346 aaPredicted RBP11.03□□□□□ -0.64
NEDD8-204ENST00000526430 VPS51Q9UID3 782 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 CSMD1Q96PZ7 3565 aa11.03□□□□□ -0.64
NEDD8-204ENST00000526430 EDDM13A0A1B0GTR0 161 aa11.02□□□□□ -0.65
NEDD8-204ENST00000526430 MIF4GDA9UHW6 222 aaKnown RBP11.02□□□□□ -0.65
NEDD8-204ENST00000526430 NVLO15381 856 aaKnown RBP11.02□□□□□ -0.65
NEDD8-204ENST00000526430 PLRG1O43660 514 aaKnown RBP11.02□□□□□ -0.65
NEDD8-204ENST00000526430 MFSD11O43934 449 aa11.02□□□□□ -0.65
NEDD8-204ENST00000526430 MAFKO60675 156 aa11.02□□□□□ -0.65
NEDD8-204ENST00000526430 PECAM1P16284 738 aaPredicted RBP11.02□□□□□ -0.65
NEDD8-204ENST00000526430 ELAVL4P26378 380 aaKnown RBP11.02□□□□□ -0.65
NEDD8-204ENST00000526430 PTPN7P35236 360 aa11.02□□□□□ -0.65
NEDD8-204ENST00000526430 PSMD8P48556 350 aa11.02□□□□□ -0.65
NEDD8-204ENST00000526430 RWDD2BP57060 319 aa11.02□□□□□ -0.65
NEDD8-204ENST00000526430 KCNAB2Q13303 367 aa11.02□□□□□ -0.65
NEDD8-204ENST00000526430 KLF1Q13351 362 aaPredicted RBP11.02□□□□□ -0.65
NEDD8-204ENST00000526430 POLD3Q15054 466 aaPredicted RBP11.02□□□□□ -0.65
NEDD8-204ENST00000526430 PPP2R5EQ16537 467 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms