RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FBXL19Q6PCT2 694 aa21.29■■□□□ 1
VPS28-205ENST00000526204 TMEM207Q6UWW9 146 aa21.29■■□□□ 1
VPS28-205ENST00000526204 SPATA24Q86W54 205 aa21.29■■□□□ 1
VPS28-205ENST00000526204 PGBD5Q8N414 524 aa21.29■■□□□ 1
VPS28-205ENST00000526204 FEM1CQ96JP0 617 aa21.29■■□□□ 1
VPS28-205ENST00000526204 RPRD1AQ96P16 312 aaPredicted RBP21.29■■□□□ 1
VPS28-205ENST00000526204 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.29■■□□□ 13e-6■■□□□ 14.1
VPS28-205ENST00000526204 POPDC3Q9HBV1 291 aa21.29■■□□□ 1
VPS28-205ENST00000526204 TLR8Q9NR97 1041 aaKnown RBP21.29■■□□□ 1
VPS28-205ENST00000526204 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.29■■□□□ 11e-6■■□□□ 14.1
VPS28-205ENST00000526204 MARCH2Q9P0N8 246 aa21.29■■□□□ 1
VPS28-205ENST00000526204 MARCH4Q9P2E8 410 aaPredicted RBP21.29■■□□□ 1
VPS28-205ENST00000526204 SUPT7LO94864 414 aa21.28■■□□□ 1
VPS28-205ENST00000526204 RTN3O95197 1032 aaPredicted RBP21.28■■□□□ 1
VPS28-205ENST00000526204 FDXRP22570 491 aa21.28■■□□□ 1
VPS28-205ENST00000526204 MAPKAPK2P49137 400 aa21.28■■□□□ 1
VPS28-205ENST00000526204 ACADVLP49748 655 aa21.28■■□□□ 1
VPS28-205ENST00000526204 HERVK_113P63132 956 aa21.28■■□□□ 1
VPS28-205ENST00000526204 THEMIS2Q5TEJ8 643 aa21.28■■□□□ 1
VPS28-205ENST00000526204 FBXO32Q969P5 355 aa21.28■■□□□ 1
VPS28-205ENST00000526204 ERVK-6Q9BXR3 956 aa21.28■■□□□ 1
VPS28-205ENST00000526204 TRMT13Q9NUP7 481 aaKnown RBP21.28■■□□□ 1
VPS28-205ENST00000526204 DNAJA2O60884 412 aa21.28■■□□□ 1
VPS28-205ENST00000526204 CST5P28325 142 aaPredicted RBP21.28■■□□□ 1
VPS28-205ENST00000526204 OR1E1P30953 314 aa21.28■■□□□ 1
VPS28-205ENST00000526204 TRAP1Q12931 704 aaKnown RBP21.28■■□□□ 1
VPS28-205ENST00000526204 TLR1Q15399 786 aa21.28■■□□□ 1
VPS28-205ENST00000526204 CLLU1OSQ5K130 101 aa21.28■■□□□ 1
VPS28-205ENST00000526204 VARS2Q5ST30 1063 aaKnown RBP21.28■■□□□ 1
VPS28-205ENST00000526204 REP15Q6BDI9 236 aa21.28■■□□□ 1
VPS28-205ENST00000526204 LDB1Q86U70 411 aaPredicted RBP21.28■■□□□ 1
VPS28-205ENST00000526204 MIB1Q86YT6 1006 aa21.28■■□□□ 1
VPS28-205ENST00000526204 PCSK9Q8NBP7 692 aaKnown RBP21.28■■□□□ 1
VPS28-205ENST00000526204 RIN3Q8TB24 985 aa21.28■■□□□ 1
VPS28-205ENST00000526204 HMGCLL1Q8TB92 370 aa21.28■■□□□ 1
VPS28-205ENST00000526204 SEMA3CQ99985 751 aa21.28■■□□□ 1
VPS28-205ENST00000526204 SPATA16Q9BXB7 569 aa21.28■■□□□ 1
VPS28-205ENST00000526204 SPAG4Q9NPE6 437 aa21.28■■□□□ 1
VPS28-205ENST00000526204 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.28■■□□□ 1
VPS28-205ENST00000526204 CCDC167Q9P0B6 97 aa21.28■■□□□ 1
VPS28-205ENST00000526204 CNOT11Q9UKZ1 510 aaKnown RBP21.28■■□□□ 1
VPS28-205ENST00000526204 RIMKLBQ9ULI2 386 aa21.28■■□□□ 1
VPS28-205ENST00000526204 C15orf38-AP3S2A0A0A6YYH1 394 aa21.27■■□□□ 1
VPS28-205ENST00000526204 UBFD1O14562 309 aaKnown RBP21.27■■□□□ 1
VPS28-205ENST00000526204 TRPA1O75762 1119 aa21.27■■□□□ 1
VPS28-205ENST00000526204 TBX18O95935 607 aa21.27■■□□□ 1
VPS28-205ENST00000526204 IGLV3-27P01718 113 aa21.27■■□□□ 1
VPS28-205ENST00000526204 ETFBP38117 255 aa21.27■■□□□ 1
VPS28-205ENST00000526204 POLE2P56282 527 aa21.27■■□□□ 1
VPS28-205ENST00000526204 RING1Q06587 406 aa21.27■■□□□ 1
VPS28-205ENST00000526204 PPP1R3AQ16821 1122 aa21.27■■□□□ 1
VPS28-205ENST00000526204 C10orf120Q5SQS8 335 aa21.27■■□□□ 1
VPS28-205ENST00000526204 RGMBQ6NW40 437 aa21.27■■□□□ 1
VPS28-205ENST00000526204 HACD2Q6Y1H2 254 aa21.27■■□□□ 1
VPS28-205ENST00000526204 LARP4Q71RC2 724 aaKnown RBP eCLIP21.27■■□□□ 1
VPS28-205ENST00000526204 RPS27LQ71UM5 84 aaKnown RBP21.27■■□□□ 1
VPS28-205ENST00000526204 ARPINQ7Z6K5 226 aa21.27■■□□□ 1
VPS28-205ENST00000526204 CLYBLQ8N0X4 340 aa21.27■■□□□ 1
VPS28-205ENST00000526204 LILRA2Q8N149 483 aa21.27■■□□□ 1
VPS28-205ENST00000526204 PCDH20Q8N6Y1 951 aaKnown RBP21.27■■□□□ 1
VPS28-205ENST00000526204 BRSK1Q8TDC3 778 aa21.27■■□□□ 1
VPS28-205ENST00000526204 TBATAQ96M53 351 aa21.27■■□□□ 1
VPS28-205ENST00000526204 KLHL32Q96NJ5 620 aa21.27■■□□□ 1
VPS28-205ENST00000526204 FAM193BQ96PV7 902 aaPredicted RBP21.27■■□□□ 1
VPS28-205ENST00000526204 NDUFA13Q9P0J0 144 aa21.27■■□□□ 1
VPS28-205ENST00000526204 GABRQQ9UN88 632 aa21.27■■□□□ 1
VPS28-205ENST00000526204 CRYL1Q9Y2S2 319 aa21.27■■□□□ 1
VPS28-205ENST00000526204 MYO16Q9Y6X6 1858 aa21.27■□□□□ 0.99
VPS28-205ENST00000526204 TTC24A2A3L6 582 aaPredicted RBP21.26■□□□□ 0.99
VPS28-205ENST00000526204 OR51F1A6NGY5 319 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 E7ENX8 843 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 CCL22O00626 93 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 FBP2O00757 339 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 CD3EAPO15446 510 aaKnown RBP21.26■□□□□ 0.99
VPS28-205ENST00000526204 PRAMEF11O60813 436 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 C8BP07358 591 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 PABPC4LP0CB38 370 aaKnown RBP21.26■□□□□ 0.99
VPS28-205ENST00000526204 TCN1P20061 433 aaPredicted RBP21.26■□□□□ 0.99
VPS28-205ENST00000526204 KCNC1P48547 511 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 FLT3LGP49771 235 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 SUOXP51687 545 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 ZNF235Q14590 738 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 CTXN3Q4LDR2 81 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 RAB44Q7Z6P3 723 aaPredicted RBP21.26■□□□□ 0.99
VPS28-205ENST00000526204 RTN4RL1Q86UN2 441 aaPredicted RBP21.26■□□□□ 0.99
VPS28-205ENST00000526204 MFN1Q8IWA4 741 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 PKP2Q99959 881 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 KCTD3Q9Y597 815 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 OR6C75A6NL08 312 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 RPP40O75818 363 aaKnown RBP21.26■□□□□ 0.99
VPS28-205ENST00000526204 GOT2P00505 430 aaKnown RBP21.26■□□□□ 0.99
VPS28-205ENST00000526204 CD1DP15813 335 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 CALRP27797 417 aaKnown RBP21.26■□□□□ 0.99
VPS28-205ENST00000526204 STX1BP61266 288 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 UNC50Q53HI1 259 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 PIM3Q86V86 326 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 ATAD1Q8NBU5 361 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 RHEBL1Q8TAI7 183 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 C19orf60Q96EN9 201 aa21.26■□□□□ 0.99
VPS28-205ENST00000526204 ZNF599Q96NL3 588 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms