RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 S100A3P33764 101 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 MAGEA8P43361 318 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 PFKPQ01813 784 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 ITGA7Q13683 1181 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 HIST2H2ACQ16777 129 aaPredicted RBP11.74□□□□□ -0.53
SYNPO-204ENST00000519664 HIST2H2AA3Q6FI13 130 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 RPS27LQ71UM5 84 aaKnown RBP11.74□□□□□ -0.53
SYNPO-204ENST00000519664 HEXDCQ8WVB3 486 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 TEKT5Q96M29 485 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 IQCF5A8MTL0 148 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 FZD9O00144 591 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 KRT8P05787 483 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 MC4RP32245 332 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 CHI3L1P36222 383 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 EIF2B2P49770 351 aaKnown RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 LSM3P62310 102 aaKnown RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 TJAP1Q5JTD0 557 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 CDHR3Q6ZTQ4 885 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 RALGPS2Q86X27 583 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 TMCO5AQ8N6Q1 288 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 DNAJC1Q96KC8 554 aaKnown RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 SLC39A8Q9C0K1 460 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 RIBC2Q9H4K1 309 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 ARMC7Q9H6L4 198 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 DNAAF2Q9NVR5 837 aaKnown RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 UBAP1Q9NZ09 502 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 ANAPC2Q9UJX6 822 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 TRIM17Q9Y577 477 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 A0A0J9YYE9 177 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 TMEM233B4DJY2 109 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 ATP5BP06576 529 aaKnown RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 ALOX15P16050 662 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 TYMPP19971 482 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 MAPK11Q15759 364 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 KCNA10Q16322 511 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 SLC9B1Q4ZJI4 515 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 INTS6LQ5JSJ4 861 aaKnown RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 PQLC3Q8N755 202 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 TNIP2Q8NFZ5 429 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 TSPAN14Q8NG11 270 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 BBS2Q9BXC9 721 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 RCOR3Q9P2K3 495 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 ZMYND8Q9ULU4 1186 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 SF3B1O75533 1304 aaKnown RBP eCLIP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 NUP188Q5SRE5 1749 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 ULK1O75385 1050 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 APOA1P02647 267 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 LPOP22079 712 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 MTTPP55157 894 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 CAMK2GQ13555 558 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 PCBP1Q15365 356 aaKnown RBP eCLIP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 MAPKAPK3Q16644 382 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 BRMS1LQ5PSV4 323 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 C6orf52Q5T4I8 152 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 RBM44Q6ZP01 1051 aaKnown RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 MCOLN3Q8TDD5 553 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 BRI3BPQ8WY22 251 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 LPGAT1Q92604 370 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 TRMT13Q9NUP7 481 aaKnown RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 FBXW11Q9UKB1 542 aa11.73□□□□□ -0.53
SYNPO-204ENST00000519664 SETD1AO15047 1707 aaKnown RBP11.73□□□□□ -0.53
SYNPO-204ENST00000519664 STX16-NPEPL1H3BU86 382 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 IRF8Q02556 426 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PRKG2Q13237 762 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 SQLEQ14534 574 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PLCL1Q15111 1095 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 ZNF467Q7Z7K2 595 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-204ENST00000519664 CAMK1DQ8IU85 385 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 SPPL2CQ8IUH8 684 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 FAM47BQ8NA70 645 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 HMCESQ96FZ2 354 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 FAM126AQ9BYI3 521 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PRDM16Q9HAZ2 1276 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 POMPQ9Y244 141 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 MTF2Q9Y483 593 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PRKCGP05129 697 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 FCGR1AP12314 374 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 MSH3P20585 1137 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 IVDP26440 423 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 SLC16A1P53985 500 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 KCNJ11Q14654 390 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PRKD1Q15139 912 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-204ENST00000519664 SIX1Q15475 284 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-204ENST00000519664 INSCQ1MX18 579 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PPM1LQ5SGD2 360 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 NKAPQ8N5F7 415 aaKnown RBP11.72□□□□□ -0.53
SYNPO-204ENST00000519664 SEC14L1Q92503 715 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 OR52B2Q96RD2 323 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 GPR21Q99679 349 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 SH3GL1Q99961 368 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 C2orf49Q9BVC5 232 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PADI4Q9UM07 663 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 COL1A2P08123 1366 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 DHRS12A0PJE2 317 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 GSTM1P09488 218 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 VCLP18206 1134 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 ACSM2AQ08AH3 577 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 DMPKQ09013 629 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 ACSM2BQ68CK6 577 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PPP4R4Q6NUP7 873 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms