RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 HNF1BP35680 557 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 WNT3AP56704 352 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 SIX1Q15475 284 aaPredicted RBP14.31□□□□□ -0.12
NUP54-216ENST00000514901 QPCTQ16769 361 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 PARP6Q2NL67 630 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 P3H1Q32P28 736 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 HS1BP3Q53T59 392 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 TCEAL6Q6IPX3 200 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 ARHGEF18Q6ZSZ5 1173 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 CBARPQ8N350 705 aaPredicted RBP14.31□□□□□ -0.12
NUP54-216ENST00000514901 LPCAT1Q8NF37 534 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 CCDC110Q8TBZ0 833 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 ACTRT1Q8TDG2 376 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 C1orf54Q8WWF1 131 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 ATG4AQ8WYN0 398 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 TCEAL3Q969E4 200 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 CENPTQ96BT3 561 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 RMDN1Q96DB5 314 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 KLHDC7BQ96G42 594 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 TRIB3Q96RU7 358 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 GOLGA6AQ9NYA3 693 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 ANKRD6Q9Y2G4 727 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 SLCO1B1Q9Y6L6 691 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 CEP250Q9BV73 2442 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 A0A1B0GVT2 93 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 LOC285095A0A1B0GVY8 99 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 CTAGE9A4FU28 777 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 CAPN8A6NHC0 703 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 NPIPB15A6NHN6 443 aaPredicted RBP14.3□□□□□ -0.12
NUP54-216ENST00000514901 PSMD3O43242 534 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 CER1O95813 267 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 CTPS1P17812 591 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 LIMK1P53667 647 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 GRIK2Q13002 908 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 LRRC14Q15048 493 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 ACOX1Q15067 660 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 PCSK7Q16549 785 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 PAPD7Q5XG87 772 aaKnown RBP14.3□□□□□ -0.12
NUP54-216ENST00000514901 KDELC1Q6UW63 502 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 C4orf22Q6V702 233 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 ABI3BPQ7Z7G0 1075 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 KLF6Q99612 283 aaPredicted RBP14.3□□□□□ -0.12
NUP54-216ENST00000514901 NAPGQ99747 312 aaPredicted RBP14.3□□□□□ -0.12
NUP54-216ENST00000514901 ERVMER34-1Q9H9K5 563 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 MAGEE1Q9HCI5 957 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 TMEM9BQ9NQ34 198 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 UBP1Q9NZI7 540 aa14.3□□□□□ -0.12
NUP54-216ENST00000514901 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.3□□□□□ -0.12
NUP54-216ENST00000514901 RGSL1A5PLK6 1076 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 A6NNZ2 444 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 A8MX80 341 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 PGRMC1O00264 195 aaKnown RBP14.29□□□□□ -0.12
NUP54-216ENST00000514901 WNT9AO14904 365 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 RAD51BO15315 384 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 RECQL5O94762 991 aaPredicted RBP14.29□□□□□ -0.12
NUP54-216ENST00000514901 WNT1P04628 370 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 ALPIP09923 528 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 HLA-DPA1P20036 260 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 PSMB4P28070 264 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 CTSKP43235 329 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 RABIFP47224 123 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 YPEL5P62699 121 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 SEMG2Q02383 582 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 SNX1Q13596 522 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 CNGA3Q16281 694 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 KIF19Q2TAC6 998 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 FAM182AQ5T1J6 154 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 CRTC1Q6UUV9 634 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 KYAT3Q6YP21 454 aaKnown RBP14.29□□□□□ -0.12
NUP54-216ENST00000514901 KDELC2Q7Z4H8 507 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 NLRP8Q86W28 1048 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 OXR1Q8N573 874 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 CCDC89Q8N998 374 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 CCHCR1Q8TD31 782 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 NETO1Q8TDF5 533 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 COG1Q8WTW3 980 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 OXNAD1Q96HP4 312 aaPredicted RBP14.29□□□□□ -0.12
NUP54-216ENST00000514901 MRGPRX2Q96LB1 330 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 BMFQ96LC9 184 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 COQ10AQ96MF6 247 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 WDR24Q96S15 920 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 EDEM2Q9BV94 578 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 FSD1LQ9BXM9 530 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 FZD3Q9NPG1 666 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 GDF3Q9NR23 364 aa14.29□□□□□ -0.12
NUP54-216ENST00000514901 CFAP54Q96N23 3096 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 GOLGA6L10A0A0M3HER8 536 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 IFNB1P01574 187 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 FGF1P05230 155 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 THEGLP0DJG4 465 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 LHCGRP22888 699 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 FDFT1P37268 417 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 STC1P52823 247 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 GDF10P55107 478 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 CLDN2P57739 230 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 NXPH1P58417 271 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 BNC1Q01954 994 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 PTSQ03393 145 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 GALNT3Q14435 633 aa14.28□□□□□ -0.12
NUP54-216ENST00000514901 SLC1A5Q15758 541 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms