RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CLIC3O95833 236 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 LDLRP01130 860 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 ALBP02768 609 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 NTRK1P04629 796 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 PABPC1P11940 636 aaKnown RBP9.71□□□□□ -0.86
SYNE1-230ENST00000495090 SAT1P21673 171 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 AXLP30530 894 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 OXTRP30559 389 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 POLR2IP36954 125 aaKnown RBP9.71□□□□□ -0.86
SYNE1-230ENST00000495090 OPRL1P41146 370 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 MRPL19P49406 292 aaKnown RBP9.71□□□□□ -0.86
SYNE1-230ENST00000495090 SLC26A2P50443 739 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF135P52742 658 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-230ENST00000495090 MLLT10P55197 1068 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF33AQ06730 810 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 SCAPQ12770 1279 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 FXNQ16595 210 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 AMHR2Q16671 573 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF618Q5T7W0 954 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 AGAP9Q5VTM2 703 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 OTUD1Q5VV17 481 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-230ENST00000495090 SLC2A7Q6PXP3 512 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 CYHR1Q6ZMK1 362 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 KIAA0408Q6ZU52 694 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 MFSD6LQ8IWD5 586 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 C2CD4AQ8NCU7 369 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-230ENST00000495090 PIK3C3Q8NEB9 887 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 CHST13Q8NET6 341 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 OR9I1Q8NGQ6 314 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 NTAN1Q96AB6 310 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 FKBP10Q96AY3 582 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 L3HYPDHQ96EM0 354 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 C19orf60Q96EN9 201 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 TEPSINQ96N21 525 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 ASB2Q96Q27 587 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 NPY6RQ99463 290 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 CTRCQ99895 268 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 OMDQ99983 421 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 SLC39A3Q9BRY0 314 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 MINDY3Q9H8M7 445 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 CMTM6Q9NX76 183 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 ANAPC2Q9UJX6 822 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 USP21Q9UK80 565 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 DERAQ9Y315 318 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 PCDHA9Q9Y5H5 950 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 TYW5A2RUC4 315 aaKnown RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 UNCXA6NJT0 531 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 NRP1O14786 923 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ANGPT2O15123 496 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ONECUT3O60422 494 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 JRKO75564 520 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 SNAP29O95721 258 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 IQCF3P0C7M6 154 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 TGM1P22735 817 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 SLC6A2P23975 617 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 EEF1DP29692 281 aaKnown RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 HPCAL1P37235 193 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 TAS2R39P59534 338 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 NFKB2Q00653 900 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 TRIM32Q13049 653 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 SEMA3BQ13214 749 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 SLC14A2Q15849 920 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 CRY1Q16526 586 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 CLPPQ16740 277 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 PHKG1Q16816 387 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 CYP51A1Q16850 503 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 PITRM1Q5JRX3 1037 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 DEFB106AQ8N104 65 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 CADM3Q8N126 398 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 C7orf31Q8N865 590 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 HDAC2Q92769 488 aaKnown RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 LRRC58Q96CX6 371 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 OTUD5Q96G74 571 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 TEKT5Q96M29 485 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 CSF3RQ99062 836 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 BDH2Q9BUT1 245 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 LHPPQ9H008 270 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 TSPYL2Q9H2G4 693 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 SMARCAD1Q9H4L7 1026 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 GSTO2Q9H4Y5 243 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 AS3MTQ9HBK9 375 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 TNFRSF12AQ9NP84 129 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 HPS4Q9NQG7 708 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ANKMY1Q9P2S6 941 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ENPP5Q9UJA9 477 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 STAP1Q9ULZ2 295 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 NME7Q9Y5B8 376 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 TLL2Q9Y6L7 1015 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 DOCK1Q14185 1865 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 UBXN8O00124 270 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 RSL1D1O76021 490 aaKnown RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 HPRP00739 348 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 LTA4HP09960 611 aaKnown RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ALDOCP09972 364 aaKnown RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 LCP1P13796 627 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ERCC2P18074 760 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 PAMP19021 973 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 NFKB1P19838 968 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 IMPDH1P20839 514 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 CRHBPP24387 322 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms