RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SERPINA6P08185 405 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GP5P40197 560 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 VEGFBP49765 207 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RHOAP61586 193 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DPYSL2Q16555 572 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TEX44Q53QW1 395 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SNX32Q86XE0 403 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GRIN3AQ8TCU5 1115 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 HDAC10Q969S8 669 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PPP1R10Q96QC0 940 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TBL1YQ9BQ87 522 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.79□□□□□ -0.687e-6■■■■□ 23.5
MSH5-SAPCD1-207ENST00000493662 IGFLR1Q9H665 355 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CLK4Q9HAZ1 481 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PNPLA3Q9NST1 481 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FAIMQ9NVQ4 179 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TEKT2Q9UIF3 430 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RAB26Q9ULW5 256 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SORCS3Q9UPU3 1222 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SLC45A1Q9Y2W3 748 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SUPT3HB4E1H0 165 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 C9JVG2 144 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CHEK2O96017 543 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ALBP02768 609 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ACVRL1P37023 503 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SLC11A1P49279 550 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SERPINB9P50453 376 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SLC10A7Q0GE19 358 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 HS6ST3Q8IZP7 471 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NIPA2Q8N8Q9 360 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FAM47BQ8NA70 645 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZFP28Q8NHY6 868 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PIWIL2Q8TC59 973 aaKnown RBP10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TAMM41Q96BW9 452 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 WDR70Q9NW82 654 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SLC2A6Q9UGQ3 507 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CNTN6Q9UQ52 1028 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 AAR2Q9Y312 384 aaKnown RBP10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 LRRC37AA6NMS7 1700 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NEMP2A6NFY4 417 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TRAFD1O14545 582 aaPredicted RBP10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 T-ENOLP0DO92 83 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PGAM1P18669 254 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CD97P48960 835 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PGFP49763 221 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TPTEP56180 551 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TRIM60Q495X7 471 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CYP2R1Q6VVX0 501 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MON1AQ86VX9 555 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 C10orf107Q8IVU9 208 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CLEC4FQ8N1N0 589 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ELMOD1Q8N336 334 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ARL14EPQ8N8R7 260 aaPredicted RBP10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZMIZ2Q8NF64 920 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 HBEGFQ99075 208 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PNPOQ9NVS9 261 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 COPG2Q9UBF2 871 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FBXW11Q9UKB1 542 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CROTQ9UKG9 612 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SH3PXD2BA1X283 911 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 J3QRK9 145 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TK2O00142 265 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CRTAMO95727 393 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GSTT2P0CG29 244 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GSTT2BP0CG30 244 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CDK4P11802 303 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FMO4P31512 558 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SLC1A6P48664 564 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RENBPP51606 427 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GEMP55040 296 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DEFA1P59665 94 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DEFA3P59666 94 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TRIM25Q14258 630 aaKnown RBP10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ALFQ53S48 1182 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PLPP4Q5VZY2 271 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TXNDC8Q6A555 127 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CDHR3Q6ZTQ4 885 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ADCY4Q8NFM4 1077 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SEC14L1Q92503 715 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GLMNQ92990 594 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FBXL8Q96CD0 374 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PAWRQ96IZ0 340 aaKnown RBP10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 USP29Q9HBJ7 922 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CDH22Q9UJ99 828 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PLA2G4CQ9UP65 541 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ACOT9Q9Y305 439 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KCTD3Q9Y597 815 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SCN1AP35498 2009 aa10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TRIP12Q14669 1992 aaPredicted RBP10.78□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SIPA1L1O43166 1804 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NOTOA8MTQ0 251 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DPYSL4O14531 572 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PFDN6O15212 129 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SERPINI2O75830 405 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TOMM70O94826 608 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CCNA2P20248 432 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 IL4RP24394 825 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GABRR2P28476 465 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 AKT1P31749 480 aa10.77□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CDH5P33151 784 aaPredicted RBP10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms