RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 FRG1Q14331 258 aaKnown RBP4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 PPP6R3Q5H9R7 873 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 C6orf141Q5SZD1 244 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 HAUS3Q68CZ6 603 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 CREB3L2Q70SY1 520 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 PDILTQ8N807 584 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 HARBI1Q96MB7 349 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 IFIH1Q9BYX4 1025 aaKnown RBP4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 GLIS2Q9BZE0 524 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 OCIAD1Q9NX40 245 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 SELENONQ9NZV5 590 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 DLGAP2Q9P1A6 1054 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 SNX9Q9Y5X1 595 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 CAPN7Q9Y6W3 813 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 CKAP5Q14008 2032 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 EVPLQ92817 2033 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 TAF4O00268 1085 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 WNT9BO14905 357 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 TGFB3P10600 412 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 PSMA4P25789 261 aaKnown RBP4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 ITGB8P26012 769 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 CCKARP32238 428 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 PIP4K2AP48426 406 aaPredicted RBP4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 KRTAP10-11P60412 298 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 SLC45A4Q5BKX6 768 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 SGO1Q5FBB7 561 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 XKR9Q5GH70 373 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 FAM180BQ6P0A1 224 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 METTL2BQ6P1Q9 378 aaKnown RBP4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 B3GNT6Q6ZMB0 384 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 CLIP4Q8N3C7 705 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 FRMD1Q8N878 549 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 C9orf106Q8NAJ2 232 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 NEK9Q8TD19 979 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 PSPC1Q8WXF1 523 aaKnown RBP4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 SKA1Q96BD8 255 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 METTL2AQ96IZ6 378 aaKnown RBP4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 MEIS3Q99687 375 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 TMEM47Q9BQJ4 181 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 TKTL2Q9H0I9 626 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 FBRSL1Q9HCM7 1045 aaKnown RBP4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 DDX4Q9NQI0 724 aaKnown RBP4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 EHD2Q9NZN4 543 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 KCNE2Q9Y6J6 123 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 STON1Q9Y6Q2 735 aa4.96□□□□□ -1.62
HMGB1P38-201ENST00000490557 A0A0U1RQJ8 604 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 IFNL4K9M1U5 179 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 G6PDP11413 515 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 IL7RP16871 459 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 DDX5P17844 614 aaKnown RBP4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 HNRNPH1P31943 449 aaKnown RBP4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 ICAM3P32942 547 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 DSCR9P59020 149 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 SETQ01105 290 aaPredicted RBP4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 OLIG2Q13516 323 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 ERV3-1Q14264 604 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 SLC39A14Q15043 492 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 CALCRLQ16602 461 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 USP41Q3LFD5 358 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 CCDC30Q5VVM6 783 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 GGNBP1Q5YKI7 109 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 KIAA1161Q6NSJ0 714 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 QSOX2Q6ZRP7 698 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 CCDC13Q8IYE1 715 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 ADAMTS15Q8TE58 950 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 NUDCD2Q8WVJ2 157 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 RTP4Q96DX8 246 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 TMEM68Q96MH6 324 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 FIZ1Q96SL8 496 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 FAM110AQ9BQ89 295 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 HINT3Q9NQE9 182 aaKnown RBP4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 CNGB3Q9NQW8 809 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 TERF2IPQ9NYB0 399 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 TTC7AQ9ULT0 858 aaPredicted RBP4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 CEPT1Q9Y6K0 416 aa4.95□□□□□ -1.62
HMGB1P38-201ENST00000490557 TDRD9Q8NDG6 1382 aaKnown RBP4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 A0A087X0M5 115 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 IGLV5-52A0A0A0MRZ9 124 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 A0A1B0GX30 115 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 A0A1W2PRG0 241 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 IKBKBO14920 756 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 TGFB1I1O43294 461 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 KCNAB3O43448 404 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 RNASEH2AO75792 299 aaKnown RBP4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 GAGE7O76087 117 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 NKX2-2O95096 273 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 IPO7O95373 1038 aaKnown RBP4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 GAGE12FP0CL80 117 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 GAGE12GP0CL81 117 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 GAGE12IP0CL82 117 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 ZNF182P17025 639 aaPredicted RBP4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 PBX3P40426 434 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 EIF2S3P41091 472 aaKnown RBP4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 RGS2P41220 211 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 METAP2P50579 478 aaKnown RBP eCLIP4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 RAD23BP54727 409 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 SEC61A1P61619 476 aaKnown RBP4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 GAGE1Q13065 139 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 GAGE4Q13068 117 aa4.94□□□□□ -1.62
HMGB1P38-201ENST00000490557 DHX34Q14147 1143 aaKnown RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms